Amemiya T - Search Results

1

IDEAL: Intrinsically Disordered proteins with Extensive Annotations and Literature.

Fukuchi S, Sakamoto S, Nobe Y, Murakami SD, Amemiya T, Hosoda K, Koike R, Hiroaki H, Ota M. Fukuchi S, et al. Among authors: amemiya t. Nucleic Acids Res. 2012 Jan;40(Database issue):D507-11. doi: 10.1093/nar/gkr884. Epub 2011 Nov 8. Nucleic Acids Res. 2012. PMID: 22067451 Free PMC article.

2

SAHG, a comprehensive database of predicted structures of all human proteins.

Motono C, Nakata J, Koike R, Shimizu K, Shirota M, Amemiya T, Tomii K, Nagano N, Sakaya N, Misoo K, Sato M, Kidera A, Hiroaki H, Shirai T, Kinoshita K, Noguchi T, Ota M. Motono C, et al. Among authors: amemiya t. Nucleic Acids Res. 2011 Jan;39(Database issue):D487-93. doi: 10.1093/nar/gkq1057. Epub 2010 Nov 3. Nucleic Acids Res. 2011. PMID: 21051360 Free PMC article.

3

PSCDB: a database for protein structural change upon ligand binding.

Amemiya T, Koike R, Kidera A, Ota M. Amemiya T, et al. Nucleic Acids Res. 2012 Jan;40(Database issue):D554-8. doi: 10.1093/nar/gkr966. Epub 2011 Nov 10. Nucleic Acids Res. 2012. PMID: 22080505 Free PMC article.

4

An assignment of intrinsically disordered regions of proteins based on NMR structures.

Ota M, Koike R, Amemiya T, Tenno T, Romero PR, Hiroaki H, Dunker AK, Fukuchi S. Ota M, et al. Among authors: amemiya t. J Struct Biol. 2013 Jan;181(1):29-36. doi: 10.1016/j.jsb.2012.10.017. Epub 2012 Nov 7. J Struct Biol. 2013. PMID: 23142703 Free PMC article.

5

IDEAL in 2014 illustrates interaction networks composed of intrinsically disordered proteins and their binding partners.

Fukuchi S, Amemiya T, Sakamoto S, Nobe Y, Hosoda K, Kado Y, Murakami SD, Koike R, Hiroaki H, Ota M. Fukuchi S, et al. Among authors: amemiya t. Nucleic Acids Res. 2014 Jan;42(Database issue):D320-5. doi: 10.1093/nar/gkt1010. Epub 2013 Oct 30. Nucleic Acids Res. 2014. PMID: 24178034 Free PMC article.

6

Interface property responsible for effective interactions of protean segments: Intrinsically disordered regions that undergo disorder-to-order transitions upon binding.

Shaji D, Amemiya T, Koike R, Ota M. Shaji D, et al. Among authors: amemiya t. Biochem Biophys Res Commun. 2016 Sep 9;478(1):123-127. doi: 10.1016/j.bbrc.2016.07.082. Epub 2016 Jul 20. Biochem Biophys Res Commun. 2016. PMID: 27450808

7

Structural changes of homodimers in the PDB.

Koike R, Amemiya T, Horii T, Ota M. Koike R, et al. Among authors: amemiya t. J Struct Biol. 2018 Apr;202(1):42-50. doi: 10.1016/j.jsb.2017.12.004. Epub 2017 Dec 9. J Struct Biol. 2018. PMID: 29233747

8

Protein structural change upon ligand binding correlates with enzymatic reaction mechanism.

Koike R, Amemiya T, Ota M, Kidera A. Koike R, et al. Among authors: amemiya t. J Mol Biol. 2008 Jun 6;379(3):397-401. doi: 10.1016/j.jmb.2008.04.019. Epub 2008 Apr 11. J Mol Biol. 2008. PMID: 18455184

9

Substrate-shielding and hydrolytic reaction in hydrolases.

Kanematsu Y, Koike R, Amemiya T, Ota M. Kanematsu Y, et al. Among authors: amemiya t. Proteins. 2013 Jun;81(6):926-32. doi: 10.1002/prot.24253. Epub 2013 Feb 25. Proteins. 2013. PMID: 23345013

10

Classification and annotation of the relationship between protein structural change and ligand binding.

Amemiya T, Koike R, Fuchigami S, Ikeguchi M, Kidera A. Amemiya T, et al. J Mol Biol. 2011 May 6;408(3):568-84. doi: 10.1016/j.jmb.2011.02.058. Epub 2011 Mar 3. J Mol Biol. 2011. PMID: 21376729

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