Ambjörnsson T - Search Results

1

Facilitated sequence assembly using densely labeled optical DNA barcodes: A combinatorial auction approach.

Dvirnas A, Pichler C, Stewart CL, Quaderi S, Nyberg LK, Müller V, Kumar Bikkarolla S, Kristiansson E, Sandegren L, Westerlund F, Ambjörnsson T. Dvirnas A, et al. Among authors: ambjornsson t. PLoS One. 2018 Mar 9;13(3):e0193900. doi: 10.1371/journal.pone.0193900. eCollection 2018. PLoS One. 2018. PMID: 29522539 Free PMC article.

2

Competitive binding-based optical DNA mapping for fast identification of bacteria--multi-ligand transfer matrix theory and experimental applications on Escherichia coli.

Nilsson AN, Emilsson G, Nyberg LK, Noble C, Stadler LS, Fritzsche J, Moore ER, Tegenfeldt JO, Ambjörnsson T, Westerlund F. Nilsson AN, et al. Among authors: ambjornsson t. Nucleic Acids Res. 2014 Sep;42(15):e118. doi: 10.1093/nar/gku556. Epub 2014 Jul 10. Nucleic Acids Res. 2014. PMID: 25013180 Free PMC article.

3

A fast and scalable kymograph alignment algorithm for nanochannel-based optical DNA mappings.

Noble C, Nilsson AN, Freitag C, Beech JP, Tegenfeldt JO, Ambjörnsson T. Noble C, et al. Among authors: ambjornsson t. PLoS One. 2015 Apr 13;10(4):e0121905. doi: 10.1371/journal.pone.0121905. eCollection 2015. PLoS One. 2015. PMID: 25875920 Free PMC article.

4

Fast size-determination of intact bacterial plasmids using nanofluidic channels.

Frykholm K, Nyberg LK, Lagerstedt E, Noble C, Fritzsche J, Karami N, Ambjörnsson T, Sandegren L, Westerlund F. Frykholm K, et al. Among authors: ambjornsson t. Lab Chip. 2015 Jul 7;15(13):2739-43. doi: 10.1039/c5lc00378d. Epub 2015 May 21. Lab Chip. 2015. PMID: 25997119

5

Bacteriophage strain typing by rapid single molecule analysis.

Grunwald A, Dahan M, Giesbertz A, Nilsson A, Nyberg LK, Weinhold E, Ambjörnsson T, Westerlund F, Ebenstein Y. Grunwald A, et al. Among authors: ambjornsson t. Nucleic Acids Res. 2015 Oct 15;43(18):e117. doi: 10.1093/nar/gkv563. Epub 2015 May 27. Nucleic Acids Res. 2015. PMID: 26019180 Free PMC article.

6

Extension of nanoconfined DNA: Quantitative comparison between experiment and theory.

Iarko V, Werner E, Nyberg LK, Müller V, Fritzsche J, Ambjörnsson T, Beech JP, Tegenfeldt JO, Mehlig K, Westerlund F, Mehlig B. Iarko V, et al. Among authors: ambjornsson t. Phys Rev E Stat Nonlin Soft Matter Phys. 2015 Dec;92(6):062701. doi: 10.1103/PhysRevE.92.062701. Epub 2015 Dec 2. Phys Rev E Stat Nonlin Soft Matter Phys. 2015. PMID: 26764721

7

Rapid identification of intact bacterial resistance plasmids via optical mapping of single DNA molecules.

Nyberg LK, Quaderi S, Emilsson G, Karami N, Lagerstedt E, Müller V, Noble C, Hammarberg S, Nilsson AN, Sjöberg F, Fritzsche J, Kristiansson E, Sandegren L, Ambjörnsson T, Westerlund F. Nyberg LK, et al. Among authors: ambjornsson t. Sci Rep. 2016 Jul 27;6:30410. doi: 10.1038/srep30410. Sci Rep. 2016. PMID: 27460437 Free PMC article.

8

Rapid Tracing of Resistance Plasmids in a Nosocomial Outbreak Using Optical DNA Mapping.

Müller V, Karami N, Nyberg LK, Pichler C, Torche Pedreschi PC, Quaderi S, Fritzsche J, Ambjörnsson T, Åhrén C, Westerlund F. Müller V, et al. Among authors: ambjornsson t. ACS Infect Dis. 2016 May 13;2(5):322-8. doi: 10.1021/acsinfecdis.6b00017. Epub 2016 Mar 29. ACS Infect Dis. 2016. PMID: 27627201

9

Super-Resolution Genome Mapping in Silicon Nanochannels.

Jeffet J, Kobo A, Su T, Grunwald A, Green O, Nilsson AN, Eisenberg E, Ambjörnsson T, Westerlund F, Weinhold E, Shabat D, Purohit PK, Ebenstein Y. Jeffet J, et al. Among authors: ambjornsson t. ACS Nano. 2016 Nov 22;10(11):9823-9830. doi: 10.1021/acsnano.6b05398. Epub 2016 Sep 23. ACS Nano. 2016. PMID: 27646634

10

Direct identification of antibiotic resistance genes on single plasmid molecules using CRISPR/Cas9 in combination with optical DNA mapping.

Müller V, Rajer F, Frykholm K, Nyberg LK, Quaderi S, Fritzsche J, Kristiansson E, Ambjörnsson T, Sandegren L, Westerlund F. Müller V, et al. Among authors: ambjornsson t. Sci Rep. 2016 Dec 1;6:37938. doi: 10.1038/srep37938. Sci Rep. 2016. PMID: 27905467 Free PMC article.

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