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NERO: a biomedical named-entity (recognition) ontology with a large, annotated corpus reveals meaningful associations through text embedding.
Wang K, Stevens R, Alachram H, Li Y, Soldatova L, King R, Ananiadou S, Schoene AM, Li M, Christopoulou F, Ambite JL, Matthew J, Garg S, Hermjakob U, Marcu D, Sheng E, Beißbarth T, Wingender E, Galstyan A, Gao X, Chambers B, Pan W, Khomtchouk BB, Evans JA, Rzhetsky A. Wang K, et al. Among authors: ambite jl. NPJ Syst Biol Appl. 2021 Oct 20;7(1):38. doi: 10.1038/s41540-021-00200-x. NPJ Syst Biol Appl. 2021. PMID: 34671039 Free PMC article.
GEM: The GAAIN Entity Mapper.
Ashish N, Dewan P, Ambite JL, Toga AW. Ashish N, et al. Among authors: ambite jl. Data Integr Life Sci. 2015 Jul;9162:13-27. doi: 10.1007/978-3-319-21843-4_2. Epub 2015 Jul 8. Data Integr Life Sci. 2015. PMID: 26665184 Free PMC article.
Democratizing data science through data science training.
Van Horn JD, Fierro L, Kamdar J, Gordon J, Stewart C, Bhattrai A, Abe S, Lei X, O'Driscoll C, Sinha A, Jain P, Burns G, Lerman K, Ambite JL. Van Horn JD, et al. Among authors: ambite jl. Pac Symp Biocomput. 2018;23:292-303. Pac Symp Biocomput. 2018. PMID: 29218890 Free PMC article.
Enabling collaborative research using the Biomedical Informatics Research Network (BIRN).
Helmer KG, Ambite JL, Ames J, Ananthakrishnan R, Burns G, Chervenak AL, Foster I, Liming L, Keator D, Macciardi F, Madduri R, Navarro JP, Potkin S, Rosen B, Ruffins S, Schuler R, Turner JA, Toga A, Williams C, Kesselman C; Biomedical Informatics Research Network. Helmer KG, et al. Among authors: ambite jl. J Am Med Inform Assoc. 2011 Jul-Aug;18(4):416-22. doi: 10.1136/amiajnl-2010-000032. Epub 2011 Apr 22. J Am Med Inform Assoc. 2011. PMID: 21515543 Free PMC article.
51 results