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GET_PANGENES: calling pangenes from plant genome alignments confirms presence-absence variation.
Genome Biol. 2023 Oct 5;24(1):223. doi: 10.1186/s13059-023-03071-z.
Genome Biol. 2023.
PMID: 37798615
Free PMC article.
Novel molecules and target genes for vegetative heat tolerance in wheat.
Rose T, Wilkinson M, Lowe C, Xu J, Hughes D, Hassall KL, Hassani-Pak K, Amberkar S, Noleto-Dias C, Ward J, Heuer S.
Rose T, et al.
Plant Environ Interact. 2022 Dec 26;3(6):264-289. doi: 10.1002/pei3.10096. eCollection 2022 Dec.
Plant Environ Interact. 2022.
PMID: 37284432
Free PMC article.
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KnetMiner: a comprehensive approach for supporting evidence-based gene discovery and complex trait analysis across species.
Hassani-Pak K, Singh A, Brandizi M, Hearnshaw J, Parsons JD, Amberkar S, Phillips AL, Doonan JH, Rawlings C.
Hassani-Pak K, et al.
Plant Biotechnol J. 2021 Aug;19(8):1670-1678. doi: 10.1111/pbi.13583. Epub 2021 Apr 5.
Plant Biotechnol J. 2021.
PMID: 33750020
Free PMC article.
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An integrative approach for a network based meta-analysis of viral RNAi screens.
Amberkar SS, Kaderali L.
Amberkar SS, et al.
Algorithms Mol Biol. 2015 Feb 13;10:6. doi: 10.1186/s13015-015-0035-7. eCollection 2015.
Algorithms Mol Biol. 2015.
PMID: 25691914
Free PMC article.
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