Alpern D - Search Results

1

Multi-well plate lid for single-step pooling of 96 samples for high-throughput barcode-based sequencing.

Boder-Pasche S, Demir M, Heub S, Garzuel M, Ischer R, Migliozzi D, Graf S, Schmid N, Atakan HB, Gudkova D, Alpern D, Dainese R, Deplancke B, Weder G. Boder-Pasche S, et al. Among authors: alpern d. Biomed Microdevices. 2024 Feb 28;26(2):18. doi: 10.1007/s10544-024-00702-5. Biomed Microdevices. 2024. PMID: 38416278 Free PMC article.

2

BRB-seq: ultra-affordable high-throughput transcriptomics enabled by bulk RNA barcoding and sequencing.

Alpern D, Gardeux V, Russeil J, Mangeat B, Meireles-Filho ACA, Breysse R, Hacker D, Deplancke B. Alpern D, et al. Genome Biol. 2019 Apr 19;20(1):71. doi: 10.1186/s13059-019-1671-x. Genome Biol. 2019. PMID: 30999927 Free PMC article.

3

SMiLE-seq identifies binding motifs of single and dimeric transcription factors.

Isakova A, Groux R, Imbeault M, Rainer P, Alpern D, Dainese R, Ambrosini G, Trono D, Bucher P, Deplancke B. Isakova A, et al. Among authors: alpern d. Nat Methods. 2017 Mar;14(3):316-322. doi: 10.1038/nmeth.4143. Epub 2017 Jan 16. Nat Methods. 2017. PMID: 28092692

4

A parallelized, automated platform enabling individual or sequential ChIP of histone marks and transcription factors.

Dainese R, Gardeux V, Llimos G, Alpern D, Jiang JY, Meireles-Filho ACA, Deplancke B. Dainese R, et al. Among authors: alpern d. Proc Natl Acad Sci U S A. 2020 Jun 16;117(24):13828-13838. doi: 10.1073/pnas.1913261117. Epub 2020 May 27. Proc Natl Acad Sci U S A. 2020. PMID: 32461370 Free PMC article.

5

The Genetics of Transcription Factor DNA Binding Variation.

Deplancke B, Alpern D, Gardeux V. Deplancke B, et al. Among authors: alpern d. Cell. 2016 Jul 28;166(3):538-554. doi: 10.1016/j.cell.2016.07.012. Cell. 2016. PMID: 27471964 Free article. Review.

6

Mammalian adipogenesis regulator (Areg) cells use retinoic acid signalling to be non- and anti-adipogenic in age-dependent manner.

Zachara M, Rainer PY, Hashimi H, Russeil JM, Alpern D, Ferrero R, Litovchenko M, Deplancke B. Zachara M, et al. Among authors: alpern d. EMBO J. 2022 Sep 15;41(18):e108206. doi: 10.15252/embj.2021108206. Epub 2022 Aug 22. EMBO J. 2022. PMID: 35996853 Free PMC article.

7

Shared acute phase traits in effector and memory human CD8 T cells.

Fuertes Marraco SA, Alpern D, Lofek S, Lourenco J, Bovay A, Maby-El Hajjami H, Delorenzi M, Deplancke B, Speiser DE. Fuertes Marraco SA, et al. Among authors: alpern d. Curr Res Immunol. 2021 Dec 29;3:1-12. doi: 10.1016/j.crimmu.2021.12.002. eCollection 2022. Curr Res Immunol. 2021. PMID: 35496820 Free PMC article.

8

A leukemia-protective germline variant mediates chromatin module formation via transcription factor nucleation.

Llimos G, Gardeux V, Koch U, Kribelbauer JF, Hafner A, Alpern D, Pezoldt J, Litovchenko M, Russeil J, Dainese R, Moia R, Mahmoud AM, Rossi D, Gaidano G, Plass C, Lutsik P, Gerhauser C, Waszak SM, Boettiger A, Radtke F, Deplancke B. Llimos G, et al. Among authors: alpern d. Nat Commun. 2022 Apr 19;13(1):2042. doi: 10.1038/s41467-022-29625-6. Nat Commun. 2022. PMID: 35440565 Free PMC article.

9

Mitochondrial gene signature in the prefrontal cortex for differential susceptibility to chronic stress.

Weger M, Alpern D, Cherix A, Ghosal S, Grosse J, Russeil J, Gruetter R, de Kloet ER, Deplancke B, Sandi C. Weger M, et al. Among authors: alpern d. Sci Rep. 2020 Oct 27;10(1):18308. doi: 10.1038/s41598-020-75326-9. Sci Rep. 2020. PMID: 33110158 Free PMC article.

10

Dissecting the brown adipogenic regulatory network using integrative genomics.

Pradhan RN, Bues JJ, Gardeux V, Schwalie PC, Alpern D, Chen W, Russeil J, Raghav SK, Deplancke B. Pradhan RN, et al. Among authors: alpern d. Sci Rep. 2017 Feb 9;7:42130. doi: 10.1038/srep42130. Sci Rep. 2017. PMID: 28181539 Free PMC article.

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