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DISMIRA: Prioritization of disease candidates in miRNA-disease associations based on maximum weighted matching inference model and motif-based analysis.
Nalluri JJ, Kamapantula BK, Barh D, Jain N, Bhattacharya A, Almeida SS, Ramos RT, Silva A, Azevedo V, Ghosh P. Nalluri JJ, et al. Among authors: almeida ss. BMC Genomics. 2015;16 Suppl 5(Suppl 5):S12. doi: 10.1186/1471-2164-16-S5-S12. Epub 2015 May 26. BMC Genomics. 2015. PMID: 26040329 Free PMC article.
Proteome scale comparative modeling for conserved drug and vaccine targets identification in Corynebacterium pseudotuberculosis.
Hassan SS, Tiwari S, Guimarães LC, Jamal SB, Folador E, Sharma NB, de Castro Soares S, Almeida S, Ali A, Islam A, Póvoa FD, de Abreu VA, Jain N, Bhattacharya A, Juneja L, Miyoshi A, Silva A, Barh D, Turjanski A, Azevedo V, Ferreira RS. Hassan SS, et al. Among authors: almeida s. BMC Genomics. 2014;15 Suppl 7(Suppl 7):S3. doi: 10.1186/1471-2164-15-S7-S3. Epub 2014 Oct 27. BMC Genomics. 2014. PMID: 25573232 Free PMC article.
The Corynebacterium pseudotuberculosis in silico predicted pan-exoproteome.
Santos AR, Carneiro A, Gala-García A, Pinto A, Barh D, Barbosa E, Aburjaile F, Dorella F, Rocha F, Guimarães L, Zurita-Turk M, Ramos R, Almeida S, Soares S, Pereira U, Abreu VC, Silva A, Miyoshi A, Azevedo V. Santos AR, et al. BMC Genomics. 2012;13 Suppl 5(Suppl 5):S6. doi: 10.1186/1471-2164-13-S5-S6. Epub 2012 Oct 19. BMC Genomics. 2012. PMID: 23095951 Free PMC article.
Corynebacterium pseudotuberculosis may be under anagenesis and biovar Equi forms biovar Ovis: a phylogenic inference from sequence and structural analysis.
Oliveira A, Teixeira P, Azevedo M, Jamal SB, Tiwari S, Almeida S, Silva A, Barh D, Dorneles EM, Haas DJ, Heinemann MB, Ghosh P, Lage AP, Figueiredo H, Ferreira RS, Azevedo V. Oliveira A, et al. BMC Microbiol. 2016 Jun 2;16:100. doi: 10.1186/s12866-016-0717-4. BMC Microbiol. 2016. PMID: 27251711 Free PMC article.
Comparative analysis of two complete Corynebacterium ulcerans genomes and detection of candidate virulence factors.
Trost E, Al-Dilaimi A, Papavasiliou P, Schneider J, Viehoever P, Burkovski A, Soares SC, Almeida SS, Dorella FA, Miyoshi A, Azevedo V, Schneider MP, Silva A, Santos CS, Santos LS, Sabbadini P, Dias AA, Hirata R Jr, Mattos-Guaraldi AL, Tauch A. Trost E, et al. Among authors: almeida ss. BMC Genomics. 2011 Jul 30;12:383. doi: 10.1186/1471-2164-12-383. BMC Genomics. 2011. PMID: 21801446 Free PMC article.
Exoproteome and secretome derived broad spectrum novel drug and vaccine candidates in Vibrio cholerae targeted by Piper betel derived compounds.
Barh D, Barve N, Gupta K, Chandra S, Jain N, Tiwari S, Leon-Sicairos N, Canizalez-Roman A, dos Santos AR, Hassan SS, Almeida S, Ramos RT, de Abreu VA, Carneiro AR, Soares Sde C, Castro TL, Miyoshi A, Silva A, Kumar A, Misra AN, Blum K, Braverman ER, Azevedo V. Barh D, et al. Among authors: almeida s. PLoS One. 2013;8(1):e52773. doi: 10.1371/journal.pone.0052773. Epub 2013 Jan 30. PLoS One. 2013. PMID: 23382822 Free PMC article.
Mutations and genomic islands can explain the strain dependency of sugar utilization in 21 strains of Propionibacterium freudenreichii.
Loux V, Mariadassou M, Almeida S, Chiapello H, Hammani A, Buratti J, Gendrault A, Barbe V, Aury JM, Deutsch SM, Parayre S, Madec MN, Chuat V, Jan G, Peterlongo P, Azevedo V, Le Loir Y, Falentin H. Loux V, et al. BMC Genomics. 2015 Apr 15;16(1):296. doi: 10.1186/s12864-015-1467-7. BMC Genomics. 2015. PMID: 25886522 Free PMC article.
188 results