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Complete genome sequence and analysis of Alcaligenes faecalis strain Mc250, a new potential plant bioinoculant.
Felestrino ÉB, Sanchez AB, Caneschi WL, Lemes CGC, Assis RAB, Cordeiro IF, Fonseca NP, Villa MM, Vieira IT, Kamino LHY, do Carmo FF, da Silva AM, Thomas AM, Patané JSL, Ferreira FC, de Freitas LG, Varani AM, Ferro JA, Silva RS, Almeida NF, Garcia CCM, Setubal JC, Moreira LM. Felestrino ÉB, et al. Among authors: almeida nf. PLoS One. 2020 Nov 5;15(11):e0241546. doi: 10.1371/journal.pone.0241546. eCollection 2020. PLoS One. 2020. PMID: 33151992 Free PMC article.
Serratia liquefaciens FG3 isolated from a metallophyte plant sheds light on the evolution and mechanisms of adaptive traits in extreme environments.
Caneschi WL, Sanchez AB, Felestrino ÉB, Lemes CGC, Cordeiro IF, Fonseca NP, Villa MM, Vieira IT, Moraes LÂG, Assis RAB, do Carmo FF, Kamino LHY, Silva RS, Ferro JA, Ferro MIT, Ferreira RM, Santos VL, Silva UCM, Almeida NF, Varani AM, Garcia CCM, Setubal JC, Moreira LM. Caneschi WL, et al. Among authors: almeida nf. Sci Rep. 2019 Nov 29;9(1):18006. doi: 10.1038/s41598-019-54601-4. Sci Rep. 2019. PMID: 31784663 Free PMC article.
TabPath: interactive tables for metabolic pathway analysis.
Moraes LÂG, Felestrino ÉB, Assis RAB, Matos D, Lima JC, Lima LA, Almeida NF, Setubal JC, Garcia CCM, Moreira LM. Moraes LÂG, et al. Among authors: almeida nf. Bioinformatics. 2018 Mar 15;34(6):1040-1042. doi: 10.1093/bioinformatics/btx714. Bioinformatics. 2018. PMID: 29112698
Comparative genomics analyses of citrus-associated bacteria.
Moreira LM, de Souza RF, Almeida NF Jr, Setubal JC, Oliveira JC, Furlan LR, Ferro JA, da Silva AC. Moreira LM, et al. Among authors: almeida nf jr. Annu Rev Phytopathol. 2004;42:163-84. doi: 10.1146/annurev.phyto.42.040803.140310. Annu Rev Phytopathol. 2004. PMID: 15283664 Review.
Detection and identification of Xanthomonas pathotypes associated with citrus diseases using comparative genomics and multiplex PCR.
Fonseca NP, Felestrino ÉB, Caneschi WL, Sanchez AB, Cordeiro IF, Lemes CGC, Assis RAB, Carvalho FMS, Ferro JA, Varani AM, Belasque J, Setubal JC, Telles GP, Aguena DS, Almeida NF, Moreira LM. Fonseca NP, et al. Among authors: almeida nf. PeerJ. 2019 Oct 1;7:e7676. doi: 10.7717/peerj.7676. eCollection 2019. PeerJ. 2019. PMID: 31592342 Free PMC article.
Novel insights into the genomic basis of citrus canker based on the genome sequences of two strains of Xanthomonas fuscans subsp. aurantifolii.
Moreira LM, Almeida NF Jr, Potnis N, Digiampietri LA, Adi SS, Bortolossi JC, da Silva AC, da Silva AM, de Moraes FE, de Oliveira JC, de Souza RF, Facincani AP, Ferraz AL, Ferro MI, Furlan LR, Gimenez DF, Jones JB, Kitajima EW, Laia ML, Leite RP Jr, Nishiyama MY, Rodrigues Neto J, Nociti LA, Norman DJ, Ostroski EH, Pereira HA Jr, Staskawicz BJ, Tezza RI, Ferro JA, Vinatzer BA, Setubal JC. Moreira LM, et al. Among authors: almeida nf jr. BMC Genomics. 2010 Apr 13;11:238. doi: 10.1186/1471-2164-11-238. BMC Genomics. 2010. PMID: 20388224 Free PMC article.
Identification and analysis of seven effector protein families with different adaptive and evolutionary histories in plant-associated members of the Xanthomonadaceae.
Assis RAB, Polloni LC, Patané JSL, Thakur S, Felestrino ÉB, Diaz-Caballero J, Digiampietri LA, Goulart LR, Almeida NF, Nascimento R, Dandekar AM, Zaini PA, Setubal JC, Guttman DS, Moreira LM. Assis RAB, et al. Among authors: almeida nf. Sci Rep. 2017 Nov 23;7(1):16133. doi: 10.1038/s41598-017-16325-1. Sci Rep. 2017. PMID: 29170530 Free PMC article.
Comparative Genomics for Prokaryotes.
Setubal JC, Almeida NF, Wattam AR. Setubal JC, et al. Among authors: almeida nf. Methods Mol Biol. 2018;1704:55-78. doi: 10.1007/978-1-4939-7463-4_3. Methods Mol Biol. 2018. PMID: 29277863 Review.
A comparative genomic analysis of Xanthomonas arboricola pv. juglandis strains reveal hallmarks of mobile genetic elements in the adaptation and accelerated evolution of virulence.
Assis RAB, Varani AM, Sagawa CHD, Patané JSL, Setubal JC, Uceda-Campos G, da Silva AM, Zaini PA, Almeida NF, Moreira LM, Dandekar AM. Assis RAB, et al. Among authors: almeida nf. Genomics. 2021 Jul;113(4):2513-2525. doi: 10.1016/j.ygeno.2021.06.003. Epub 2021 Jun 3. Genomics. 2021. PMID: 34089784 Free article.
Origin and diversification of Xanthomonas citri subsp. citri pathotypes revealed by inclusive phylogenomic, dating, and biogeographic analyses.
Patané JSL, Martins J Jr, Rangel LT, Belasque J, Digiampietri LA, Facincani AP, Ferreira RM, Jaciani FJ, Zhang Y, Varani AM, Almeida NF, Wang N, Ferro JA, Moreira LM, Setubal JC. Patané JSL, et al. Among authors: almeida nf. BMC Genomics. 2019 Sep 9;20(1):700. doi: 10.1186/s12864-019-6007-4. BMC Genomics. 2019. PMID: 31500575 Free PMC article.
66 results