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Page 1
Phylogenomics of Xanthomonas field strains infecting pepper and tomato reveals diversity in effector repertoires and identifies determinants of host specificity.
Schwartz AR, Potnis N, Timilsina S, Wilson M, Patané J, Martins J Jr, Minsavage GV, Dahlbeck D, Akhunova A, Almeida N, Vallad GE, Barak JD, White FF, Miller SA, Ritchie D, Goss E, Bart RS, Setubal JC, Jones JB, Staskawicz BJ. Schwartz AR, et al. Among authors: almeida n. Front Microbiol. 2015 Jun 3;6:535. doi: 10.3389/fmicb.2015.00535. eCollection 2015. Front Microbiol. 2015. PMID: 26089818 Free PMC article.
Comparative genomics reveals diversity among xanthomonads infecting tomato and pepper.
Potnis N, Krasileva K, Chow V, Almeida NF, Patil PB, Ryan RP, Sharlach M, Behlau F, Dow JM, Momol M, White FF, Preston JF, Vinatzer BA, Koebnik R, Setubal JC, Norman DJ, Staskawicz BJ, Jones JB. Potnis N, et al. Among authors: almeida nf. BMC Genomics. 2011 Mar 11;12:146. doi: 10.1186/1471-2164-12-146. BMC Genomics. 2011. PMID: 21396108 Free PMC article.
Comparative Genomics for Prokaryotes.
Setubal JC, Almeida NF, Wattam AR. Setubal JC, et al. Methods Mol Biol. 2018;1704:55-78. doi: 10.1007/978-1-4939-7463-4_3. Methods Mol Biol. 2018. PMID: 29277863 Review.
Origin and diversification of Xanthomonas citri subsp. citri pathotypes revealed by inclusive phylogenomic, dating, and biogeographic analyses.
Patané JSL, Martins J Jr, Rangel LT, Belasque J, Digiampietri LA, Facincani AP, Ferreira RM, Jaciani FJ, Zhang Y, Varani AM, Almeida NF, Wang N, Ferro JA, Moreira LM, Setubal JC. Patané JSL, et al. Among authors: almeida nf. BMC Genomics. 2019 Sep 9;20(1):700. doi: 10.1186/s12864-019-6007-4. BMC Genomics. 2019. PMID: 31500575 Free PMC article.
A draft genome sequence of Pseudomonas syringae pv. tomato T1 reveals a type III effector repertoire significantly divergent from that of Pseudomonas syringae pv. tomato DC3000.
Almeida NF, Yan S, Lindeberg M, Studholme DJ, Schneider DJ, Condon B, Liu H, Viana CJ, Warren A, Evans C, Kemen E, Maclean D, Angot A, Martin GB, Jones JD, Collmer A, Setubal JC, Vinatzer BA. Almeida NF, et al. Mol Plant Microbe Interact. 2009 Jan;22(1):52-62. doi: 10.1094/MPMI-22-1-0052. Mol Plant Microbe Interact. 2009. PMID: 19061402 Free article.
Novel insights into the genomic basis of citrus canker based on the genome sequences of two strains of Xanthomonas fuscans subsp. aurantifolii.
Moreira LM, Almeida NF Jr, Potnis N, Digiampietri LA, Adi SS, Bortolossi JC, da Silva AC, da Silva AM, de Moraes FE, de Oliveira JC, de Souza RF, Facincani AP, Ferraz AL, Ferro MI, Furlan LR, Gimenez DF, Jones JB, Kitajima EW, Laia ML, Leite RP Jr, Nishiyama MY, Rodrigues Neto J, Nociti LA, Norman DJ, Ostroski EH, Pereira HA Jr, Staskawicz BJ, Tezza RI, Ferro JA, Vinatzer BA, Setubal JC. Moreira LM, et al. Among authors: almeida nf jr. BMC Genomics. 2010 Apr 13;11:238. doi: 10.1186/1471-2164-11-238. BMC Genomics. 2010. PMID: 20388224 Free PMC article.
Patterns and processes of Mycobacterium bovis evolution revealed by phylogenomic analyses.
Patané JS, Martins J, Beatriz Castelão A, Nishibe C, Montera L, Bigi F, Zumárraga MJ, Cataldi AA, Fonseca Junior A, Roxo E, Luiza A, Osório AR, Jorge Ufms KS, Thacker TC, Almeida NF, Araújo FR, Setubal JC. Patané JS, et al. Genome Biol Evol. 2017 Feb 13;9(3):521-35. doi: 10.1093/gbe/evx022. Online ahead of print. Genome Biol Evol. 2017. PMID: 28201585 Free PMC article.
A comparative genomic analysis of Xanthomonas arboricola pv. juglandis strains reveal hallmarks of mobile genetic elements in the adaptation and accelerated evolution of virulence.
Assis RAB, Varani AM, Sagawa CHD, Patané JSL, Setubal JC, Uceda-Campos G, da Silva AM, Zaini PA, Almeida NF, Moreira LM, Dandekar AM. Assis RAB, et al. Genomics. 2021 Jul;113(4):2513-2525. doi: 10.1016/j.ygeno.2021.06.003. Epub 2021 Jun 3. Genomics. 2021. PMID: 34089784 Free article.
Identification and analysis of seven effector protein families with different adaptive and evolutionary histories in plant-associated members of the Xanthomonadaceae.
Assis RAB, Polloni LC, Patané JSL, Thakur S, Felestrino ÉB, Diaz-Caballero J, Digiampietri LA, Goulart LR, Almeida NF, Nascimento R, Dandekar AM, Zaini PA, Setubal JC, Guttman DS, Moreira LM. Assis RAB, et al. Sci Rep. 2017 Nov 23;7(1):16133. doi: 10.1038/s41598-017-16325-1. Sci Rep. 2017. PMID: 29170530 Free PMC article.
686 results