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Alignment-free sequence comparison-a review.
Vinga S, Almeida J. Vinga S, et al. Among authors: almeida j. Bioinformatics. 2003 Mar 1;19(4):513-23. doi: 10.1093/bioinformatics/btg005. Bioinformatics. 2003. PMID: 12611807 Review.
Local Renyi entropic profiles of DNA sequences.
Vinga S, Almeida JS. Vinga S, et al. BMC Bioinformatics. 2007 Oct 16;8:393. doi: 10.1186/1471-2105-8-393. BMC Bioinformatics. 2007. PMID: 17939871 Free PMC article.
Benchmarking of alignment-free sequence comparison methods.
Zielezinski A, Girgis HZ, Bernard G, Leimeister CA, Tang K, Dencker T, Lau AK, Röhling S, Choi JJ, Waterman MS, Comin M, Kim SH, Vinga S, Almeida JS, Chan CX, James BT, Sun F, Morgenstern B, Karlowski WM. Zielezinski A, et al. Genome Biol. 2019 Jul 25;20(1):144. doi: 10.1186/s13059-019-1755-7. Genome Biol. 2019. PMID: 31345254 Free PMC article.
Rényi continuous entropy of DNA sequences.
Vinga S, Almeida JS. Vinga S, et al. J Theor Biol. 2004 Dec 7;231(3):377-88. doi: 10.1016/j.jtbi.2004.06.030. J Theor Biol. 2004. PMID: 15501469
Fractal MapReduce decomposition of sequence alignment.
Almeida JS, Grüneberg A, Maass W, Vinga S. Almeida JS, et al. Algorithms Mol Biol. 2012 May 2;7(1):12. doi: 10.1186/1748-7188-7-12. Algorithms Mol Biol. 2012. PMID: 22551205 Free PMC article.
3,664 results