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GraphPart: homology partitioning for biological sequence analysis.
Teufel F, Gíslason MH, Almagro Armenteros JJ, Johansen AR, Winther O, Nielsen H. Teufel F, et al. Among authors: almagro armenteros jj. NAR Genom Bioinform. 2023 Oct 16;5(4):lqad088. doi: 10.1093/nargab/lqad088. eCollection 2023 Dec. NAR Genom Bioinform. 2023. PMID: 37850036 Free PMC article.
SignalP 6.0 predicts all five types of signal peptides using protein language models.
Teufel F, Almagro Armenteros JJ, Johansen AR, Gíslason MH, Pihl SI, Tsirigos KD, Winther O, Brunak S, von Heijne G, Nielsen H. Teufel F, et al. Among authors: almagro armenteros jj. Nat Biotechnol. 2022 Jul;40(7):1023-1025. doi: 10.1038/s41587-021-01156-3. Epub 2022 Jan 3. Nat Biotechnol. 2022. PMID: 34980915 Free PMC article.
SignalP 5.0 improves signal peptide predictions using deep neural networks.
Almagro Armenteros JJ, Tsirigos KD, Sønderby CK, Petersen TN, Winther O, Brunak S, von Heijne G, Nielsen H. Almagro Armenteros JJ, et al. Nat Biotechnol. 2019 Apr;37(4):420-423. doi: 10.1038/s41587-019-0036-z. Epub 2019 Feb 18. Nat Biotechnol. 2019. PMID: 30778233
Detecting sequence signals in targeting peptides using deep learning.
Almagro Armenteros JJ, Salvatore M, Emanuelsson O, Winther O, von Heijne G, Elofsson A, Nielsen H. Almagro Armenteros JJ, et al. Life Sci Alliance. 2019 Sep 30;2(5):e201900429. doi: 10.26508/lsa.201900429. Print 2019 Oct. Life Sci Alliance. 2019. PMID: 31570514 Free PMC article.
Decline in Antibody Concentration 6 Months After Two Doses of SARS-CoV-2 BNT162b2 Vaccine in Solid Organ Transplant Recipients and Healthy Controls.
Hamm SR, Møller DL, Pérez-Alós L, Hansen CB, Pries-Heje MM, Heftdal LD, Hasselbalch RB, Fogh K, Madsen JR, Almagro Armenteros JJ, Knudsen AD, Poulsen JR, Frikke-Schmidt R, Hilsted LM, Sørensen E, Ostrowski SR, Harboe ZB, Perch M, Sørensen SS, Rasmussen A, Bundgaard H, Garred P, Iversen K, Nielsen SD. Hamm SR, et al. Among authors: almagro armenteros jj. Front Immunol. 2022 Feb 23;13:832501. doi: 10.3389/fimmu.2022.832501. eCollection 2022. Front Immunol. 2022. PMID: 35281023 Free PMC article.
13 results