Allen MA - Search Results

1

RNA binding by the glucocorticoid receptor attenuates dexamethasone-induced gene activation.

Lammer NC, Ashraf HM, Ugay DA, Spencer SL, Allen MA, Batey RT, Wuttke DS. Lammer NC, et al. Among authors: allen ma. Sci Rep. 2023 Jun 9;13(1):9385. doi: 10.1038/s41598-023-35549-y. Sci Rep. 2023. PMID: 37296231 Free PMC article.

2

The Cech Symposium: a celebration of 25 years of ribozymes, 10 years of TERT, and 60 years of Tom.

Vicens Q, Allen MA, Gilbert SD, Reznik B, Gooding AR, Batey RT. Vicens Q, et al. Among authors: allen ma. RNA. 2008 Mar;14(3):397-403. doi: 10.1261/rna.910008. Epub 2008 Jan 18. RNA. 2008. PMID: 18203922 Free PMC article.

3

Human TFIIH Kinase CDK7 Regulates Transcription-Associated Chromatin Modifications.

Ebmeier CC, Erickson B, Allen BL, Allen MA, Kim H, Fong N, Jacobsen JR, Liang K, Shilatifard A, Dowell RD, Old WM, Bentley DL, Taatjes DJ. Ebmeier CC, et al. Among authors: allen bl, allen ma. Cell Rep. 2017 Aug 1;20(5):1173-1186. doi: 10.1016/j.celrep.2017.07.021. Cell Rep. 2017. PMID: 28768201 Free PMC article.

4

Nascent transcript analysis of glucocorticoid crosstalk with TNF defines primary and cooperative inflammatory repression.

Sasse SK, Gruca M, Allen MA, Kadiyala V, Song T, Gally F, Gupta A, Pufall MA, Dowell RD, Gerber AN. Sasse SK, et al. Among authors: allen ma. Genome Res. 2019 Nov;29(11):1753-1765. doi: 10.1101/gr.248187.119. Epub 2019 Sep 13. Genome Res. 2019. PMID: 31519741 Free PMC article.

5

Quantification of transcriptome changes to investigate the role of glucocorticoid receptor-RNA binding during dexamethasone treatment.

Lammer NC, Allen MA, Batey RT, Wuttke DS. Lammer NC, et al. Among authors: allen ma. BMC Res Notes. 2023 Aug 22;16(1):181. doi: 10.1186/s13104-023-06446-4. BMC Res Notes. 2023. PMID: 37608297 Free PMC article.

6

Detecting Differential Transcription Factor Activity from ATAC-Seq Data.

Tripodi IJ, Allen MA, Dowell RD. Tripodi IJ, et al. Among authors: allen ma. Molecules. 2018 May 10;23(5):1136. doi: 10.3390/molecules23051136. Molecules. 2018. PMID: 29748466 Free PMC article.

7

Lessons from eRNAs: understanding transcriptional regulation through the lens of nascent RNAs.

Cardiello JF, Sanchez GJ, Allen MA, Dowell RD. Cardiello JF, et al. Among authors: allen ma. Transcription. 2020 Feb;11(1):3-18. doi: 10.1080/21541264.2019.1704128. Epub 2019 Dec 19. Transcription. 2020. PMID: 31856658 Free PMC article. Review.

8

Aging disrupts gene expression timing during muscle regeneration.

Kurland JV, Cutler AA, Stanley JT, Betta ND, Van Deusen A, Pawlikowski B, Hall M, Antwine T, Russell A, Allen MA, Dowell R, Olwin B. Kurland JV, et al. Among authors: allen ma. Stem Cell Reports. 2023 Jun 13;18(6):1325-1339. doi: 10.1016/j.stemcr.2023.05.005. Stem Cell Reports. 2023. PMID: 37315524 Free PMC article.

9

Cellular zinc status alters chromatin accessibility and binding of transcription factor p53 to genomic sites.

Damon LJ, Ocampo D, Sanford L, Jones T, Allen MA, Dowell RD, Palmer AE. Damon LJ, et al. Among authors: allen ma. bioRxiv [Preprint]. 2023 Nov 21:2023.11.20.567954. doi: 10.1101/2023.11.20.567954. bioRxiv. 2023. PMID: 38045276 Free PMC article. Preprint.

10

Global analysis of p53-regulated transcription identifies its direct targets and unexpected regulatory mechanisms.

Allen MA, Andrysik Z, Dengler VL, Mellert HS, Guarnieri A, Freeman JA, Sullivan KD, Galbraith MD, Luo X, Kraus WL, Dowell RD, Espinosa JM. Allen MA, et al. Elife. 2014 May 27;3:e02200. doi: 10.7554/eLife.02200. Elife. 2014. PMID: 24867637 Free PMC article.

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