Allen EE - Search Results

1

Metagenomic discovery of polybrominated diphenyl ether biosynthesis by marine sponges.

Agarwal V, Blanton JM, Podell S, Taton A, Schorn MA, Busch J, Lin Z, Schmidt EW, Jensen PR, Paul VJ, Biggs JS, Golden JW, Allen EE, Moore BS. Agarwal V, et al. Among authors: allen ee. Nat Chem Biol. 2017 May;13(5):537-543. doi: 10.1038/nchembio.2330. Epub 2017 Mar 20. Nat Chem Biol. 2017. PMID: 28319100 Free PMC article.

2

Metabolic versatility of the Riftia pachyptila endosymbiont revealed through metagenomics.

Robidart JC, Bench SR, Feldman RA, Novoradovsky A, Podell SB, Gaasterland T, Allen EE, Felbeck H. Robidart JC, et al. Among authors: allen ee. Environ Microbiol. 2008 Mar;10(3):727-37. doi: 10.1111/j.1462-2920.2007.01496.x. Environ Microbiol. 2008. PMID: 18237306

3

A database of phylogenetically atypical genes in archaeal and bacterial genomes, identified using the DarkHorse algorithm.

Podell S, Gaasterland T, Allen EE. Podell S, et al. Among authors: allen ee. BMC Bioinformatics. 2008 Oct 7;9:419. doi: 10.1186/1471-2105-9-419. BMC Bioinformatics. 2008. PMID: 18840280 Free PMC article.

4

Genomic islands link secondary metabolism to functional adaptation in marine Actinobacteria.

Penn K, Jenkins C, Nett M, Udwary DW, Gontang EA, McGlinchey RP, Foster B, Lapidus A, Podell S, Allen EE, Moore BS, Jensen PR. Penn K, et al. Among authors: allen ee. ISME J. 2009 Oct;3(10):1193-203. doi: 10.1038/ismej.2009.58. Epub 2009 May 28. ISME J. 2009. PMID: 19474814 Free PMC article.

5

Genomic insights into the physiology and ecology of the marine filamentous cyanobacterium Lyngbya majuscula.

Jones AC, Monroe EA, Podell S, Hess WR, Klages S, Esquenazi E, Niessen S, Hoover H, Rothmann M, Lasken RS, Yates JR 3rd, Reinhardt R, Kube M, Burkart MD, Allen EE, Dorrestein PC, Gerwick WH, Gerwick L. Jones AC, et al. Among authors: allen ee. Proc Natl Acad Sci U S A. 2011 May 24;108(21):8815-20. doi: 10.1073/pnas.1101137108. Epub 2011 May 9. Proc Natl Acad Sci U S A. 2011. PMID: 21555588 Free PMC article.

6

De novo metagenomic assembly reveals abundant novel major lineage of Archaea in hypersaline microbial communities.

Narasingarao P, Podell S, Ugalde JA, Brochier-Armanet C, Emerson JB, Brocks JJ, Heidelberg KB, Banfield JF, Allen EE. Narasingarao P, et al. Among authors: allen ee. ISME J. 2012 Jan;6(1):81-93. doi: 10.1038/ismej.2011.78. Epub 2011 Jun 30. ISME J. 2012. PMID: 21716304 Free PMC article.

7

Xenorhodopsins, an enigmatic new class of microbial rhodopsins horizontally transferred between archaea and bacteria.

Ugalde JA, Podell S, Narasingarao P, Allen EE. Ugalde JA, et al. Among authors: allen ee. Biol Direct. 2011 Oct 10;6:52. doi: 10.1186/1745-6150-6-52. Biol Direct. 2011. PMID: 21985229 Free PMC article.

8

The natural product domain seeker NaPDoS: a phylogeny based bioinformatic tool to classify secondary metabolite gene diversity.

Ziemert N, Podell S, Penn K, Badger JH, Allen E, Jensen PR. Ziemert N, et al. PLoS One. 2012;7(3):e34064. doi: 10.1371/journal.pone.0034064. Epub 2012 Mar 29. PLoS One. 2012. PMID: 22479523 Free PMC article.

9

Assembly-driven community genomics of a hypersaline microbial ecosystem.

Podell S, Ugalde JA, Narasingarao P, Banfield JF, Heidelberg KB, Allen EE. Podell S, et al. Among authors: allen ee. PLoS One. 2013 Apr 18;8(4):e61692. doi: 10.1371/journal.pone.0061692. Print 2013. PLoS One. 2013. PMID: 23637883 Free PMC article.

10

Seasonal fluctuations in ionic concentrations drive microbial succession in a hypersaline lake community.

Podell S, Emerson JB, Jones CM, Ugalde JA, Welch S, Heidelberg KB, Banfield JF, Allen EE. Podell S, et al. Among authors: allen ee. ISME J. 2014 May;8(5):979-90. doi: 10.1038/ismej.2013.221. Epub 2013 Dec 12. ISME J. 2014. PMID: 24335829 Free PMC article.

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