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Page 1
Transcriptional and epigenetic regulators of human CD8+ T cell function identified through orthogonal CRISPR screens.
McCutcheon SR, Swartz AM, Brown MC, Barrera A, McRoberts Amador C, Siklenka K, Humayun L, Ter Weele MA, Isaacs JM, Reddy TE, Allen AS, Nair SK, Antonia SJ, Gersbach CA. McCutcheon SR, et al. Among authors: allen as. Nat Genet. 2023 Dec;55(12):2211-2223. doi: 10.1038/s41588-023-01554-0. Epub 2023 Nov 9. Nat Genet. 2023. PMID: 37945901 Free PMC article.
Transversions have larger regulatory effects than transitions.
Guo C, McDowell IC, Nodzenski M, Scholtens DM, Allen AS, Lowe WL, Reddy TE. Guo C, et al. Among authors: allen as. BMC Genomics. 2017 May 19;18(1):394. doi: 10.1186/s12864-017-3785-4. BMC Genomics. 2017. PMID: 28525990 Free PMC article.
Human genome-wide measurement of drug-responsive regulatory activity.
Johnson GD, Barrera A, McDowell IC, D'Ippolito AM, Majoros WH, Vockley CM, Wang X, Allen AS, Reddy TE. Johnson GD, et al. Among authors: allen as. Nat Commun. 2018 Dec 21;9(1):5317. doi: 10.1038/s41467-018-07607-x. Nat Commun. 2018. PMID: 30575722 Free PMC article.
Bayesian estimation of genetic regulatory effects in high-throughput reporter assays.
Majoros WH, Kim YS, Barrera A, Li F, Wang X, Cunningham SJ, Johnson GD, Guo C, Lowe WL, Scholtens DM, Hayes MG, Reddy TE, Allen AS. Majoros WH, et al. Among authors: allen as. Bioinformatics. 2020 Jan 15;36(2):331-338. doi: 10.1093/bioinformatics/btz545. Bioinformatics. 2020. PMID: 31368479 Free PMC article.
Targeted long-read sequencing identifies missing disease-causing variation.
Miller DE, Sulovari A, Wang T, Loucks H, Hoekzema K, Munson KM, Lewis AP, Fuerte EPA, Paschal CR, Walsh T, Thies J, Bennett JT, Glass I, Dipple KM, Patterson K, Bonkowski ES, Nelson Z, Squire A, Sikes M, Beckman E, Bennett RL, Earl D, Lee W, Allikmets R, Perlman SJ, Chow P, Hing AV, Wenger TL, Adam MP, Sun A, Lam C, Chang I, Zou X, Austin SL, Huggins E, Safi A, Iyengar AK, Reddy TE, Majoros WH, Allen AS, Crawford GE, Kishnani PS; University of Washington Center for Mendelian Genomics; King MC, Cherry T, Chong JX, Bamshad MJ, Nickerson DA, Mefford HC, Doherty D, Eichler EE. Miller DE, et al. Among authors: allen as. Am J Hum Genet. 2021 Aug 5;108(8):1436-1449. doi: 10.1016/j.ajhg.2021.06.006. Epub 2021 Jul 2. Am J Hum Genet. 2021. PMID: 34216551 Free PMC article.
Sequencing studies in human genetics: design and interpretation.
Goldstein DB, Allen A, Keebler J, Margulies EH, Petrou S, Petrovski S, Sunyaev S. Goldstein DB, et al. Nat Rev Genet. 2013 Jul;14(7):460-70. doi: 10.1038/nrg3455. Epub 2013 Jun 11. Nat Rev Genet. 2013. PMID: 23752795 Free PMC article. Review.
Ancestry adjustment improves genome-wide estimates of regional intolerance.
Hayeck TJ, Stong N, Baugh E, Dhindsa R, Turner TN, Malakar A, Mosbruger TL, Shaw GT, Duan Y, Ionita-Laza I, Goldstein D, Allen AS. Hayeck TJ, et al. Among authors: allen as. Genetics. 2022 May 31;221(2):iyac050. doi: 10.1093/genetics/iyac050. Genetics. 2022. PMID: 35385101 Free PMC article.
141 results