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Bayesian estimation of genetic regulatory effects in high-throughput reporter assays.
Majoros WH, Kim YS, Barrera A, Li F, Wang X, Cunningham SJ, Johnson GD, Guo C, Lowe WL, Scholtens DM, Hayes MG, Reddy TE, Allen AS. Majoros WH, et al. Among authors: allen as. Bioinformatics. 2020 Jan 15;36(2):331-338. doi: 10.1093/bioinformatics/btz545. Bioinformatics. 2020. PMID: 31368479 Free PMC article.
SVA: software for annotating and visualizing sequenced human genomes.
Ge D, Ruzzo EK, Shianna KV, He M, Pelak K, Heinzen EL, Need AC, Cirulli ET, Maia JM, Dickson SP, Zhu M, Singh A, Allen AS, Goldstein DB. Ge D, et al. Among authors: allen as. Bioinformatics. 2011 Jul 15;27(14):1998-2000. doi: 10.1093/bioinformatics/btr317. Epub 2011 May 29. Bioinformatics. 2011. PMID: 21624899 Free PMC article.
Transversions have larger regulatory effects than transitions.
Guo C, McDowell IC, Nodzenski M, Scholtens DM, Allen AS, Lowe WL, Reddy TE. Guo C, et al. Among authors: allen as. BMC Genomics. 2017 May 19;18(1):394. doi: 10.1186/s12864-017-3785-4. BMC Genomics. 2017. PMID: 28525990 Free PMC article.
Genetic Polymorphisms of CFH and ARMS2 Do Not Predict Response to Antioxidants and Zinc in Patients with Age-Related Macular Degeneration: Independent Statistical Evaluations of Data from the Age-Related Eye Disease Study.
Assel MJ, Li F, Wang Y, Allen AS, Baggerly KA, Vickers AJ. Assel MJ, et al. Among authors: allen as. Ophthalmology. 2018 Mar;125(3):391-397. doi: 10.1016/j.ophtha.2017.09.008. Epub 2017 Oct 9. Ophthalmology. 2018. PMID: 29032853 Free PMC article. Clinical Trial.
Human genome-wide measurement of drug-responsive regulatory activity.
Johnson GD, Barrera A, McDowell IC, D'Ippolito AM, Majoros WH, Vockley CM, Wang X, Allen AS, Reddy TE. Johnson GD, et al. Among authors: allen as. Nat Commun. 2018 Dec 21;9(1):5317. doi: 10.1038/s41467-018-07607-x. Nat Commun. 2018. PMID: 30575722 Free PMC article.
Efficient estimation of grouped survival models.
Li Z, Lin J, Sibley AB, Truong T, Chua KC, Jiang Y, McCarthy J, Kroetz DL, Allen A, Owzar K. Li Z, et al. BMC Bioinformatics. 2019 May 28;20(1):269. doi: 10.1186/s12859-019-2899-x. BMC Bioinformatics. 2019. PMID: 31138120 Free PMC article.
141 results