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Shared inflammatory glial cell signature after stab wound injury, revealed by spatial, temporal, and cell-type-specific profiling of the murine cerebral cortex.
Koupourtidou C, Schwarz V, Aliee H, Frerich S, Fischer-Sternjak J, Bocchi R, Simon-Ebert T, Bai X, Sirko S, Kirchhoff F, Dichgans M, Götz M, Theis FJ, Ninkovic J. Koupourtidou C, et al. Among authors: aliee h. Nat Commun. 2024 Apr 3;15(1):2866. doi: 10.1038/s41467-024-46625-w. Nat Commun. 2024. PMID: 38570482 Free PMC article.
Best practices for single-cell analysis across modalities.
Heumos L, Schaar AC, Lance C, Litinetskaya A, Drost F, Zappia L, Lücken MD, Strobl DC, Henao J, Curion F; Single-cell Best Practices Consortium; Schiller HB, Theis FJ. Heumos L, et al. Nat Rev Genet. 2023 Aug;24(8):550-572. doi: 10.1038/s41576-023-00586-w. Epub 2023 Mar 31. Nat Rev Genet. 2023. PMID: 37002403 Free PMC article. Review.
Longitudinal Effects of 1-Year Smoking Cessation on Human Bronchial Epithelial Transcriptome.
Rathnayake SNH, Ditz B, Willemse BWM; National Heart, Lung, and Blood Institute LungMAP Consortium; Timens W, Kooistra W, Heijink IH, Oliver BGG, van den Berge M, Faiz A. Rathnayake SNH, et al. Chest. 2023 Jul;164(1):85-89. doi: 10.1016/j.chest.2022.12.050. Epub 2023 Jan 28. Chest. 2023. PMID: 36716955 Free PMC article. No abstract available.
TDP-43 condensates and lipid droplets regulate the reactivity of microglia and regeneration after traumatic brain injury.
Zambusi A, Novoselc KT, Hutten S, Kalpazidou S, Koupourtidou C, Schieweck R, Aschenbroich S, Silva L, Yazgili AS, van Bebber F, Schmid B, Möller G, Tritscher C, Stigloher C, Delbridge C, Sirko S, Günes ZI, Liebscher S, Schlegel J, Aliee H, Theis F, Meiners S, Kiebler M, Dormann D, Ninkovic J. Zambusi A, et al. Among authors: aliee h. Nat Neurosci. 2022 Dec;25(12):1608-1625. doi: 10.1038/s41593-022-01199-y. Epub 2022 Nov 24. Nat Neurosci. 2022. PMID: 36424432
Association of bronchial steroid inducible methylation quantitative trait loci with asthma and chronic obstructive pulmonary disease treatment response.
Slob EMA, Faiz A, van Nijnatten J, Vijverberg SJH, Longo C, Kutlu M, Chew FT, Sio YY, Herrera-Luis E, Espuela-Ortiz A, Perez-Garcia J, Pino-Yanes M, Burchard EG, Potočnik U, Gorenjak M, Palmer C, Maroteau C, Turner S, Verhamme K, Karimi L, Mukhopadhyay S, Timens W, Hiemstra PS, Pijnenburg MW, Neighbors M, Grimbaldeston MA, Tew GW, Brandsma CA, Berce V, Aliee H, Theis F, Sin DD, Li X, van den Berge M, Maitland-van der Zee AH, Koppelman GH. Slob EMA, et al. Among authors: aliee h. Clin Transl Allergy. 2022 Aug;12(8):e12173. doi: 10.1002/clt2.12173. Clin Transl Allergy. 2022. PMID: 36036237 Free PMC article. No abstract available.
Origin and function of activated fibroblast states during zebrafish heart regeneration.
Hu B, Lelek S, Spanjaard B, El-Sammak H, Simões MG, Mintcheva J, Aliee H, Schäfer R, Meyer AM, Theis F, Stainier DYR, Panáková D, Junker JP. Hu B, et al. Among authors: aliee h. Nat Genet. 2022 Aug;54(8):1227-1237. doi: 10.1038/s41588-022-01129-5. Epub 2022 Jul 21. Nat Genet. 2022. PMID: 35864193 Free PMC article.
Determinants of expression of SARS-CoV-2 entry-related genes in upper and lower airways.
Aliee H, Massip F, Qi C, Stella de Biase M, van Nijnatten J, Kersten ETG, Kermani NZ, Khuder B, Vonk JM, Vermeulen RCH; U-BIOPRED study group; Cambridge Lung Cancer Early Detection Programme; INER-Ciencias Mexican Lung Program; Neighbors M, Tew GW, Grimbaldeston MA, Ten Hacken NHT, Hu S, Guo Y, Zhang X, Sun K, Hiemstra PS, Ponder BA, Mäkelä MJ, Malmström K, Rintoul RC, Reyfman PA, Theis FJ, Brandsma CA, Adcock IM, Timens W, Xu CJ, van den Berge M, Schwarz RF, Koppelman GH, Nawijn MC, Faiz A. Aliee H, et al. Allergy. 2022 Feb;77(2):690-694. doi: 10.1111/all.15152. Epub 2021 Nov 3. Allergy. 2022. PMID: 34698405 Free PMC article. No abstract available.
16 results