Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.

Https

The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation

Search Page

Filters

My NCBI Filters

Text availability

Article attribute

Article type

Publication date

Search Results

44 results

Filters applied: . Clear all
Results are displayed in a computed author sort order. The Results By Year timeline is not available.
Page 1
Efficient de novo assembly of large and complex genomes by massively parallel sequencing of Fosmid pools.
Alexeyenko A, Nystedt B, Vezzi F, Sherwood E, Ye R, Knudsen B, Simonsen M, Turner B, de Jong P, Wu CC, Lundeberg J. Alexeyenko A, et al. BMC Genomics. 2014 Jun 6;15(1):439. doi: 10.1186/1471-2164-15-439. BMC Genomics. 2014. PMID: 24906298 Free PMC article.
Compared to the WGS results, the contiguity and quality of the FP assemblies were high, and they allowed us to fill WGS gaps resulting from repeats, low coverage, and allelic differences. The FP contig sets were further merged with WGS data using a novel software package G …
Compared to the WGS results, the contiguity and quality of the FP assemblies were high, and they allowed us to fill WGS gaps resulting from …
The Norway spruce genome sequence and conifer genome evolution.
Nystedt B, Street NR, Wetterbom A, Zuccolo A, Lin YC, Scofield DG, Vezzi F, Delhomme N, Giacomello S, Alexeyenko A, Vicedomini R, Sahlin K, Sherwood E, Elfstrand M, Gramzow L, Holmberg K, Hällman J, Keech O, Klasson L, Koriabine M, Kucukoglu M, Käller M, Luthman J, Lysholm F, Niittylä T, Olson A, Rilakovic N, Ritland C, Rosselló JA, Sena J, Svensson T, Talavera-López C, Theißen G, Tuominen H, Vanneste K, Wu ZQ, Zhang B, Zerbe P, Arvestad L, Bhalerao R, Bohlmann J, Bousquet J, Garcia Gil R, Hvidsten TR, de Jong P, MacKay J, Morgante M, Ritland K, Sundberg B, Thompson SL, Van de Peer Y, Andersson B, Nilsson O, Ingvarsson PK, Lundeberg J, Jansson S. Nystedt B, et al. Among authors: alexeyenko a. Nature. 2013 May 30;497(7451):579-84. doi: 10.1038/nature12211. Epub 2013 May 22. Nature. 2013. PMID: 23698360 Free article.
Spatially resolved transcriptome profiling in model plant species.
Giacomello S, Salmén F, Terebieniec BK, Vickovic S, Navarro JF, Alexeyenko A, Reimegård J, McKee LS, Mannapperuma C, Bulone V, Ståhl PL, Sundström JF, Street NR, Lundeberg J. Giacomello S, et al. Among authors: alexeyenko a. Nat Plants. 2017 May 8;3:17061. doi: 10.1038/nplants.2017.61. Nat Plants. 2017. PMID: 28481330
Genome-wide identification of Wig-1 mRNA targets by RIP-Seq analysis.
Bersani C, Huss M, Giacomello S, Xu LD, Bianchi J, Eriksson S, Jerhammar F, Alexeyenko A, Vilborg A, Lundeberg J, Lui WO, Wiman KG. Bersani C, et al. Among authors: alexeyenko a. Oncotarget. 2016 Jan 12;7(2):1895-911. doi: 10.18632/oncotarget.6557. Oncotarget. 2016. PMID: 26672765 Free PMC article.
Distinguishing between driver and passenger mutations in individual cancer genomes by network enrichment analysis.
Merid SK, Goranskaya D, Alexeyenko A. Merid SK, et al. Among authors: alexeyenko a. BMC Bioinformatics. 2014 Sep 19;15(1):308. doi: 10.1186/1471-2105-15-308. BMC Bioinformatics. 2014. PMID: 25236784 Free PMC article.
BACKGROUND: In somatic cancer genomes, delineating genuine driver mutations against a background of multiple passenger events is a challenging task. ...Finally, we summarized seemingly disparate mutations and discovered a functional network of collagen modifi …
BACKGROUND: In somatic cancer genomes, delineating genuine driver mutations against a background of multiple passenger events is a …
MGclus: network clustering employing shared neighbors.
Frings O, Alexeyenko A, Sonnhammer EL. Frings O, et al. Among authors: alexeyenko a. Mol Biosyst. 2013 Jul;9(7):1670-5. doi: 10.1039/c3mb25473a. Epub 2013 Feb 11. Mol Biosyst. 2013. PMID: 23396516
Comparative interactomics with Funcoup 2.0.
Alexeyenko A, Schmitt T, Tjärnberg A, Guala D, Frings O, Sonnhammer EL. Alexeyenko A, et al. Nucleic Acids Res. 2012 Jan;40(Database issue):D821-8. doi: 10.1093/nar/gkr1062. Epub 2011 Nov 21. Nucleic Acids Res. 2012. PMID: 22110034 Free PMC article.
44 results