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2017 1
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2023 2
2024 2

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14 results

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Page 1
Three million images and morphological profiles of cells treated with matched chemical and genetic perturbations.
Chandrasekaran SN, Cimini BA, Goodale A, Miller L, Kost-Alimova M, Jamali N, Doench JG, Fritchman B, Skepner A, Melanson M, Kalinin AA, Arevalo J, Haghighi M, Caicedo JC, Kuhn D, Hernandez D, Berstler J, Shafqat-Abbasi H, Root DE, Swalley SE, Garg S, Singh S, Carpenter AE. Chandrasekaran SN, et al. Among authors: kalinin aa. Nat Methods. 2024 Apr 9. doi: 10.1038/s41592-024-02241-6. Online ahead of print. Nat Methods. 2024. PMID: 38594452
Reproducible image-based profiling with Pycytominer.
Serrano E, Chandrasekaran SN, Bunten D, Brewer KI, Tomkinson J, Kern R, Bornholdt M, Fleming S, Pei R, Arevalo J, Tsang H, Rubinetti V, Tromans-Coia C, Becker T, Weisbart E, Bunne C, Kalinin AA, Senft R, Taylor SJ, Jamali N, Adeboye A, Abbasi HS, Goodman A, Caicedo JC, Carpenter AE, Cimini BA, Singh S, Way GP. Serrano E, et al. Among authors: kalinin aa. ArXiv [Preprint]. 2023 Nov 22:arXiv:2311.13417v1. ArXiv. 2023. PMID: 38045474 Free PMC article. Preprint.
Integrating inflammatory biomarker analysis and artificial-intelligence-enabled image-based profiling to identify drug targets for intestinal fibrosis.
Yu S, Kalinin AA, Paraskevopoulou MD, Maruggi M, Cheng J, Tang J, Icke I, Luo Y, Wei Q, Scheibe D, Hunter J, Singh S, Nguyen D, Carpenter AE, Horman SR. Yu S, et al. Among authors: kalinin aa. Cell Chem Biol. 2023 Sep 21;30(9):1169-1182.e8. doi: 10.1016/j.chembiol.2023.06.014. Epub 2023 Jul 11. Cell Chem Biol. 2023. PMID: 37437569
Ten quick tips for deep learning in biology.
Lee BD, Gitter A, Greene CS, Raschka S, Maguire F, Titus AJ, Kessler MD, Lee AJ, Chevrette MG, Stewart PA, Britto-Borges T, Cofer EM, Yu KH, Carmona JJ, Fertig EJ, Kalinin AA, Signal B, Lengerich BJ, Triche TJ Jr, Boca SM. Lee BD, et al. Among authors: kalinin aa. PLoS Comput Biol. 2022 Mar 24;18(3):e1009803. doi: 10.1371/journal.pcbi.1009803. eCollection 2022 Mar. PLoS Comput Biol. 2022. PMID: 35324884 Free PMC article. No abstract available.
Valproic acid-induced changes of 4D nuclear morphology in astrocyte cells.
Kalinin AA, Hou X, Ade AS, Fon GV, Meixner W, Higgins GA, Sexton JZ, Wan X, Dinov ID, O'Meara MJ, Athey BD. Kalinin AA, et al. Mol Biol Cell. 2021 Aug 19;32(18):1624-1633. doi: 10.1091/mbc.E20-08-0502. Epub 2021 Apr 28. Mol Biol Cell. 2021. PMID: 33909457 Free PMC article.
14 results