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Genomic surveillance activities unveil the introduction of the SARS-CoV-2 B.1.525 variant of interest in Brazil: Case report.
Pereira F, Tosta S, Lima MM, Reboredo de Oliveira da Silva L, Nardy VB, Gómez MKA, Lima JG, Fonseca V, de Oliveira T, Lourenço J, Alcantara LC Jr, Giovanetti M, Leal A. Pereira F, et al. Among authors: alcantara lc jr. J Med Virol. 2021 Sep;93(9):5523-5526. doi: 10.1002/jmv.27086. Epub 2021 May 25. J Med Virol. 2021. PMID: 33990970 Free PMC article.
Whole Genome Sequencing of SARS-CoV-2: Adapting Illumina Protocols for Quick and Accurate Outbreak Investigation during a Pandemic.
Pillay S, Giandhari J, Tegally H, Wilkinson E, Chimukangara B, Lessells R, Moosa Y, Mattison S, Gazy I, Fish M, Singh L, Khanyile KS, San JE, Fonseca V, Giovanetti M, Alcantara LC Jr, de Oliveira T. Pillay S, et al. Among authors: alcantara lc jr. Genes (Basel). 2020 Aug 17;11(8):949. doi: 10.3390/genes11080949. Genes (Basel). 2020. PMID: 32824573 Free PMC article.
Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples.
Quick J, Grubaugh ND, Pullan ST, Claro IM, Smith AD, Gangavarapu K, Oliveira G, Robles-Sikisaka R, Rogers TF, Beutler NA, Burton DR, Lewis-Ximenez LL, de Jesus JG, Giovanetti M, Hill SC, Black A, Bedford T, Carroll MW, Nunes M, Alcantara LC Jr, Sabino EC, Baylis SA, Faria NR, Loose M, Simpson JT, Pybus OG, Andersen KG, Loman NJ. Quick J, et al. Among authors: alcantara lc jr. Nat Protoc. 2017 Jun;12(6):1261-1276. doi: 10.1038/nprot.2017.066. Epub 2017 May 24. Nat Protoc. 2017. PMID: 28538739 Free PMC article.
Analyses of HTLV-1 sequences suggest interaction between ORF-I mutations and HAM/TSP outcome.
Barreto FK, Khouri R, Rego FFA, Santos LA, Castro-Amarante MF, Bialuk I, Pise-Masison CA, Galvão-Castro B, Gessain A, Jacobson S, Franchini G, Alcantara LC Jr. Barreto FK, et al. Among authors: alcantara lc jr. Infect Genet Evol. 2016 Nov;45:420-425. doi: 10.1016/j.meegid.2016.08.020. Epub 2016 Aug 21. Infect Genet Evol. 2016. PMID: 27553711 Free PMC article.
Co-dependence of HTLV-1 p12 and p8 functions in virus persistence.
Pise-Masison CA, de Castro-Amarante MF, Enose-Akahata Y, Buchmann RC, Fenizia C, Washington Parks R, Edwards D, Fiocchi M, Alcantara LC Jr, Bialuk I, Graham J, Walser JC, McKinnon K, Galvão-Castro B, Gessain A, Venzon D, Jacobson S, Franchini G. Pise-Masison CA, et al. Among authors: alcantara lc jr. PLoS Pathog. 2014 Nov 6;10(11):e1004454. doi: 10.1371/journal.ppat.1004454. eCollection 2014 Nov. PLoS Pathog. 2014. PMID: 25375128 Free PMC article.
Molecular epidemiology and clinical features of human T cell lymphotropic virus type 1 infection in Spain.
Treviño A, Alcantara LC Jr, Benito R, Caballero E, Aguilera A, Ramos JM, de Mendoza C, Rodríguez C, García J, Rodríguez-Iglesias M, Ortiz de Lejarazu R, Roc L, Parra P, Eiros J, del Romero J, Soriano V; HTLV Spanish Study Group. Treviño A, et al. Among authors: alcantara lc jr. AIDS Res Hum Retroviruses. 2014 Sep;30(9):856-62. doi: 10.1089/AID.2013.0128. Epub 2014 Jul 9. AIDS Res Hum Retroviruses. 2014. PMID: 24924996 Free PMC article.
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