Alavi A - Search Results

1

De novo construction of T cell compartment in humanized mice engrafted with iPSC-derived thymus organoids.

Zeleniak A, Wiegand C, Liu W, McCormick C, K R, Alavi A, Guan H, Bertera S, Lakomy R, Tajima A, Cohen H, Wong S, Balikani L, Mizerak B, Bar-Joseph Z, Trucco M, Banerjee I, Fan Y. Zeleniak A, et al. Among authors: alavi a. Nat Methods. 2022 Oct;19(10):1306-1319. doi: 10.1038/s41592-022-01583-3. Epub 2022 Sep 5. Nat Methods. 2022. PMID: 36064772

2

A web server for comparative analysis of single-cell RNA-seq data.

Alavi A, Ruffalo M, Parvangada A, Huang Z, Bar-Joseph Z. Alavi A, et al. Nat Commun. 2018 Nov 13;9(1):4768. doi: 10.1038/s41467-018-07165-2. Nat Commun. 2018. PMID: 30425249 Free PMC article.

3

Iterative point set registration for aligning scRNA-seq data.

Alavi A, Bar-Joseph Z. Alavi A, et al. PLoS Comput Biol. 2020 Oct 27;16(10):e1007939. doi: 10.1371/journal.pcbi.1007939. eCollection 2020 Oct. PLoS Comput Biol. 2020. PMID: 33108369 Free PMC article.

4

Supervised Adversarial Alignment of Single-Cell RNA-seq Data.

Ge S, Wang H, Alavi A, Xing E, Bar-Joseph Z. Ge S, et al. Among authors: alavi a. J Comput Biol. 2021 May;28(5):501-513. doi: 10.1089/cmb.2020.0439. Epub 2021 Jan 19. J Comput Biol. 2021. PMID: 33470876 Free PMC article.

5

Computational tools for analyzing single-cell data in pluripotent cell differentiation studies.

Ding J, Alavi A, Ebrahimkhani MR, Bar-Joseph Z. Ding J, et al. Among authors: alavi a. Cell Rep Methods. 2021 Oct 4;1(6):100087. doi: 10.1016/j.crmeth.2021.100087. eCollection 2021 Oct 25. Cell Rep Methods. 2021. PMID: 35474899 Free PMC article. Review.

6

Multiset multicover methods for discriminative marker selection.

Hasanaj E, Alavi A, Gupta A, Póczos B, Bar-Joseph Z. Hasanaj E, et al. Among authors: alavi a. Cell Rep Methods. 2022 Nov 11;2(11):100332. doi: 10.1016/j.crmeth.2022.100332. eCollection 2022 Nov 21. Cell Rep Methods. 2022. PMID: 36452867 Free PMC article.

7

Modelling post-implantation human development to yolk sac blood emergence.

Hislop J, Song Q, Keshavarz F K, Alavi A, Schoenberger R, LeGraw R, Velazquez JJ, Mokhtari T, Taheri MN, Rytel M, Chuva de Sousa Lopes SM, Watkins S, Stolz D, Kiani S, Sozen B, Bar-Joseph Z, Ebrahimkhani MR. Hislop J, et al. Among authors: alavi a. Nature. 2024 Feb;626(7998):367-376. doi: 10.1038/s41586-023-06914-8. Epub 2023 Dec 13. Nature. 2024. PMID: 38092041 Free PMC article.

8

The feasibility of genome-scale biological network inference using Graphics Processing Units.

Thiagarajan R, Alavi A, Podichetty JT, Bazil JN, Beard DA. Thiagarajan R, et al. Among authors: alavi a. Algorithms Mol Biol. 2017 Mar 20;12:8. doi: 10.1186/s13015-017-0100-5. eCollection 2017. Algorithms Mol Biol. 2017. PMID: 28344638 Free PMC article.

9

[¹⁸F]FDG PET/CT for identifying the causes of fever of unknown origin (FUO).

Singh SB, Shrestha N, Bhandari S, Shrestha S, Shrestha B, Shrestha N, Rijal S, Singh R, Hess S, Werner TJ, Alavi A, Revheim ME. Singh SB, et al. Among authors: alavi a. Am J Nucl Med Mol Imaging. 2024 Apr 25;14(2):87-96. doi: 10.62347/OQQC6007. eCollection 2024. Am J Nucl Med Mol Imaging. 2024. PMID: 38737639 Free PMC article. Review.

10

Toward Real Chemical Accuracy on Current Quantum Hardware Through the Transcorrelated Method.

Dobrautz W, Sokolov IO, Liao K, Ríos PL, Rahm M, Alavi A, Tavernelli I. Dobrautz W, et al. Among authors: alavi a. J Chem Theory Comput. 2024 May 9. doi: 10.1021/acs.jctc.4c00070. Online ahead of print. J Chem Theory Comput. 2024. PMID: 38723159

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