AlQuraishi M - Search Results

1

Recombination and lineage-specific mutations linked to the emergence of SARS-CoV-2.

Patiño-Galindo JÁ, Filip I, Chowdhury R, Maranas CD, Sorger PK, AlQuraishi M, Rabadan R. Patiño-Galindo JÁ, et al. Among authors: alquraishi m. Genome Med. 2021 Aug 6;13(1):124. doi: 10.1186/s13073-021-00943-6. Genome Med. 2021. PMID: 34362430 Free PMC article.

2

A multiscale statistical mechanical framework integrates biophysical and genomic data to assemble cancer networks.

AlQuraishi M, Koytiger G, Jenney A, MacBeath G, Sorger PK. AlQuraishi M, et al. Nat Genet. 2014 Dec;46(12):1363-1371. doi: 10.1038/ng.3138. Epub 2014 Nov 2. Nat Genet. 2014. PMID: 25362484 Free PMC article.

3

Reproducibility will only come with data liberation.

AlQuraishi M, Sorger PK. AlQuraishi M, et al. Sci Transl Med. 2016 May 18;8(339):339ed7. doi: 10.1126/scitranslmed.aaf0968. Sci Transl Med. 2016. PMID: 27194726 Free PMC article. No abstract available.

4

Biophysical prediction of protein-peptide interactions and signaling networks using machine learning.

Cunningham JM, Koytiger G, Sorger PK, AlQuraishi M. Cunningham JM, et al. Among authors: alquraishi m. Nat Methods. 2020 Feb;17(2):175-183. doi: 10.1038/s41592-019-0687-1. Epub 2020 Jan 6. Nat Methods. 2020. PMID: 31907444 Free PMC article.

5

Recombination and lineage-specific mutations linked to the emergence of SARS-CoV-2.

Patiño-Galindo JÁ, Filip I, Chowdhury R, Maranas CD, Sorger PK, AlQuraishi M, Rabadan R. Patiño-Galindo JÁ, et al. Among authors: alquraishi m. bioRxiv [Preprint]. 2021 Apr 6:2020.02.10.942748. doi: 10.1101/2020.02.10.942748. bioRxiv. 2021. PMID: 32511304 Free PMC article. Updated. Preprint.

6

Protein structure prediction by AlphaFold2: are attention and symmetries all you need?

Bouatta N, Sorger P, AlQuraishi M. Bouatta N, et al. Among authors: alquraishi m. Acta Crystallogr D Struct Biol. 2021 Aug 1;77(Pt 8):982-991. doi: 10.1107/S2059798321007531. Epub 2021 Jul 29. Acta Crystallogr D Struct Biol. 2021. PMID: 34342271 Free PMC article.

7

Differentiable biology: using deep learning for biophysics-based and data-driven modeling of molecular mechanisms.

AlQuraishi M, Sorger PK. AlQuraishi M, et al. Nat Methods. 2021 Oct;18(10):1169-1180. doi: 10.1038/s41592-021-01283-4. Epub 2021 Oct 4. Nat Methods. 2021. PMID: 34608321 Free PMC article. Review.

8

Single-sequence protein structure prediction using a language model and deep learning.

Chowdhury R, Bouatta N, Biswas S, Floristean C, Kharkar A, Roy K, Rochereau C, Ahdritz G, Zhang J, Church GM, Sorger PK, AlQuraishi M. Chowdhury R, et al. Among authors: alquraishi m. Nat Biotechnol. 2022 Nov;40(11):1617-1623. doi: 10.1038/s41587-022-01432-w. Epub 2022 Oct 3. Nat Biotechnol. 2022. PMID: 36192636 Free PMC article.

9

Publisher Correction: Single-sequence protein structure prediction using a language model and deep learning.

Chowdhury R, Bouatta N, Biswas S, Floristean C, Kharkar A, Roy K, Rochereau C, Ahdritz G, Zhang J, Church GM, Sorger PK, AlQuraishi M. Chowdhury R, et al. Among authors: alquraishi m. Nat Biotechnol. 2022 Nov;40(11):1692. doi: 10.1038/s41587-022-01556-z. Nat Biotechnol. 2022. PMID: 36253538 No abstract available.

10

A Hybrid Structure-Based Machine Learning Approach for Predicting Kinase Inhibition by Small Molecules.

Liu C, Kutchukian P, Nguyen ND, AlQuraishi M, Sorger PK. Liu C, et al. Among authors: alquraishi m. J Chem Inf Model. 2023 Sep 11;63(17):5457-5472. doi: 10.1021/acs.jcim.3c00347. Epub 2023 Aug 18. J Chem Inf Model. 2023. PMID: 37595065 Free article.

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