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A deep learning method for replicate-based analysis of chromosome conformation contacts using Siamese neural networks.
Nat Commun. 2023 Aug 17;14(1):5007. doi: 10.1038/s41467-023-40547-9.
Nat Commun. 2023.
PMID: 37591842
Free PMC article.
Chromatin jets define the properties of cohesin-driven in vivo loop extrusion.
Guo Y, Al-Jibury E, Garcia-Millan R, Ntagiantas K, King JWD, Nash AJ, Galjart N, Lenhard B, Rueckert D, Fisher AG, Pruessner G, Merkenschlager M.
Guo Y, et al. Among authors: al jibury e.
Mol Cell. 2022 Oct 20;82(20):3769-3780.e5. doi: 10.1016/j.molcel.2022.09.003. Epub 2022 Sep 30.
Mol Cell. 2022.
PMID: 36182691
Free article.
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Learning representations of chromatin contacts using a recurrent neural network identifies genomic drivers of conformation.
Dsouza KB, Maslova A, Al-Jibury E, Merkenschlager M, Bhargava VK, Libbrecht MW.
Dsouza KB, et al. Among authors: al jibury e.
Nat Commun. 2022 Jun 28;13(1):3704. doi: 10.1038/s41467-022-31337-w.
Nat Commun. 2022.
PMID: 35764630
Free PMC article.
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