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Exploring effective approaches for haplotype block phasing.
BMC Bioinformatics. 2019 Oct 30;20(1):540. doi: 10.1186/s12859-019-3095-8.
BMC Bioinformatics. 2019.
PMID: 31666002
Free PMC article.
Evaluation of consensus strategies for haplotype phasing.
Al Bkhetan Z, Chana G, Ramamohanarao K, Verspoor K, Goudey B.
Al Bkhetan Z, et al.
Brief Bioinform. 2021 Jul 20;22(4):bbaa280. doi: 10.1093/bib/bbaa280.
Brief Bioinform. 2021.
PMID: 33236761
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eQTLHap: a tool for comprehensive eQTL analysis considering haplotypic and genotypic effects.
Al Bkhetan Z, Chana G, Soon Ong C, Goudey B, Ramamohanarao K.
Al Bkhetan Z, et al.
Brief Bioinform. 2021 Sep 2;22(5):bbab093. doi: 10.1093/bib/bbab093.
Brief Bioinform. 2021.
PMID: 33834181
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Machine learning polymer models of three-dimensional chromatin organization in human lymphoblastoid cells.
Al Bkhetan Z, Kadlof M, Kraft A, Plewczynski D.
Al Bkhetan Z, et al.
Methods. 2019 Aug 15;166:83-90. doi: 10.1016/j.ymeth.2019.03.002. Epub 2019 Mar 7.
Methods. 2019.
PMID: 30853548
Free PMC article.
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Three-dimensional Epigenome Statistical Model: Genome-wide Chromatin Looping Prediction.
Al Bkhetan Z, Plewczynski D.
Al Bkhetan Z, et al.
Sci Rep. 2018 Mar 26;8(1):5217. doi: 10.1038/s41598-018-23276-8.
Sci Rep. 2018.
PMID: 29581440
Free PMC article.
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pipesnake: generalized software for the assembly and analysis of phylogenomic datasets from conserved genomic loci.
Brennan IG, Singhal S, Al Bkhetan Z.
Brennan IG, et al. Among authors: al bkhetan z.
Bioinformatics. 2024 May 2;40(5):btae195. doi: 10.1093/bioinformatics/btae195.
Bioinformatics. 2024.
PMID: 38597877
Free PMC article.
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