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NPIDB: Nucleic acid-Protein Interaction DataBase.
Nucleic Acids Res. 2013 Jan;41(Database issue):D517-23. doi: 10.1093/nar/gks1199. Epub 2012 Nov 27.
Nucleic Acids Res. 2013.
PMID: 23193292
Free PMC article.
Conserved water molecules in X-ray structures highlight the role of water in intramolecular and intermolecular interactions.
Aksianov E, Zanegina O, Grishin A, Spirin S, Karyagina A, Alexeevski A.
Aksianov E, et al.
J Bioinform Comput Biol. 2008 Aug;6(4):775-88. doi: 10.1142/s0219720008003588.
J Bioinform Comput Biol. 2008.
PMID: 18763742
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SheeP: A tool for description of β-sheets in protein 3D structures.
Aksianov E, Alexeevski A.
Aksianov E, et al.
J Bioinform Comput Biol. 2012 Apr;10(2):1241003. doi: 10.1142/S021972001241003X.
J Bioinform Comput Biol. 2012.
PMID: 22809339
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Conserved features of complexes of TATA-box binding proteins with DNA.
Zanegina O, Aksianov E, Alexeevski AV, Karyagina A, Spirin S.
Zanegina O, et al.
J Bioinform Comput Biol. 2016 Apr;14(2):1641007. doi: 10.1142/S0219720016410079.
J Bioinform Comput Biol. 2016.
PMID: 27122319
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Analysis of conserved hydrophobic cores in proteins and supramolecular complexes.
Karyagina A, Ershova A, Titov M, Olovnikov I, Aksianov E, Ryazanova A, Kubareva E, Spirin S, Alexeevski A.
Karyagina A, et al.
J Bioinform Comput Biol. 2006 Apr;4(2):357-72. doi: 10.1142/s0219720006001837.
J Bioinform Comput Biol. 2006.
PMID: 16819788
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Motif Analyzer for protein 3D structures.
Aksianov E.
Aksianov E.
J Struct Biol. 2014 Apr;186(1):62-7. doi: 10.1016/j.jsb.2014.02.017. Epub 2014 Mar 4.
J Struct Biol. 2014.
PMID: 24607867
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