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Feature-based molecular networking in the GNPS analysis environment.
Nat Methods. 2020 Sep;17(9):905-908. doi: 10.1038/s41592-020-0933-6. Epub 2020 Aug 24.
Nat Methods. 2020.
PMID: 32839597
Free PMC article.
Metabolomics Data Processing Using OpenMS.
Rurik M, Alka O, Aicheler F, Kohlbacher O.
Rurik M, et al. Among authors: aicheler f.
Methods Mol Biol. 2020;2104:49-60. doi: 10.1007/978-1-0716-0239-3_4.
Methods Mol Biol. 2020.
PMID: 31953812
Review.
Item in Clipboard
OpenMS: a flexible open-source software platform for mass spectrometry data analysis.
Röst HL, Sachsenberg T, Aiche S, Bielow C, Weisser H, Aicheler F, Andreotti S, Ehrlich HC, Gutenbrunner P, Kenar E, Liang X, Nahnsen S, Nilse L, Pfeuffer J, Rosenberger G, Rurik M, Schmitt U, Veit J, Walzer M, Wojnar D, Wolski WE, Schilling O, Choudhary JS, Malmström L, Aebersold R, Reinert K, Kohlbacher O.
Röst HL, et al. Among authors: aicheler f.
Nat Methods. 2016 Aug 30;13(9):741-8. doi: 10.1038/nmeth.3959.
Nat Methods. 2016.
PMID: 27575624
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LFQProfiler and RNP(xl): Open-Source Tools for Label-Free Quantification and Protein-RNA Cross-Linking Integrated into Proteome Discoverer.
Veit J, Sachsenberg T, Chernev A, Aicheler F, Urlaub H, Kohlbacher O.
Veit J, et al. Among authors: aicheler f.
J Proteome Res. 2016 Sep 2;15(9):3441-8. doi: 10.1021/acs.jproteome.6b00407. Epub 2016 Aug 10.
J Proteome Res. 2016.
PMID: 27476824
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SANDPUMA: ensemble predictions of nonribosomal peptide chemistry reveal biosynthetic diversity across Actinobacteria.
Chevrette MG, Aicheler F, Kohlbacher O, Currie CR, Medema MH.
Chevrette MG, et al. Among authors: aicheler f.
Bioinformatics. 2017 Oct 15;33(20):3202-3210. doi: 10.1093/bioinformatics/btx400.
Bioinformatics. 2017.
PMID: 28633438
Free PMC article.
Item in Clipboard
Retention Time Prediction Improves Identification in Nontargeted Lipidomics Approaches.
Aicheler F, Li J, Hoene M, Lehmann R, Xu G, Kohlbacher O.
Aicheler F, et al.
Anal Chem. 2015 Aug 4;87(15):7698-704. doi: 10.1021/acs.analchem.5b01139. Epub 2015 Jul 22.
Anal Chem. 2015.
PMID: 26145158
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Assessment of network module identification across complex diseases.
Choobdar S, Ahsen ME, Crawford J, Tomasoni M, Fang T, Lamparter D, Lin J, Hescott B, Hu X, Mercer J, Natoli T, Narayan R; DREAM Module Identification Challenge Consortium; Subramanian A, Zhang JD, Stolovitzky G, Kutalik Z, Lage K, Slonim DK, Saez-Rodriguez J, Cowen LJ, Bergmann S, Marbach D.
Choobdar S, et al.
Nat Methods. 2019 Sep;16(9):843-852. doi: 10.1038/s41592-019-0509-5. Epub 2019 Aug 30.
Nat Methods. 2019.
PMID: 31471613
Free PMC article.
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The evaluation of tools used to predict the impact of missense variants is hindered by two types of circularity.
Grimm DG, Azencott CA, Aicheler F, Gieraths U, MacArthur DG, Samocha KE, Cooper DN, Stenson PD, Daly MJ, Smoller JW, Duncan LE, Borgwardt KM.
Grimm DG, et al. Among authors: aicheler f.
Hum Mutat. 2015 May;36(5):513-23. doi: 10.1002/humu.22768. Epub 2015 Mar 26.
Hum Mutat. 2015.
PMID: 25684150
Free PMC article.
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