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A primer on the use of machine learning to distil knowledge from data in biological psychiatry.
Quinn TP, Hess JL, Marshe VS, Barnett MM, Hauschild AC, Maciukiewicz M, Elsheikh SSM, Men X, Schwarz E, Trakadis YJ, Breen MS, Barnett EJ, Zhang-James Y, Ahsen ME, Cao H, Chen J, Hou J, Salekin A, Lin PI, Nicodemus KK, Meyer-Lindenberg A, Bichindaritz I, Faraone SV, Cairns MJ, Pandey G, Müller DJ, Glatt SJ; Machine Learning in Psychiatry (MLPsych) Consortium. Quinn TP, et al. Among authors: ahsen me. Mol Psychiatry. 2024 Jan 4. doi: 10.1038/s41380-023-02334-2. Online ahead of print. Mol Psychiatry. 2024. PMID: 38177352 Review.
Unannotated small RNA clusters associated with circulating extracellular vesicles detect early stage liver cancer.
von Felden J, Garcia-Lezana T, Dogra N, Gonzalez-Kozlova E, Ahsen ME, Craig A, Gifford S, Wunsch B, Smith JT, Kim S, Diaz JEL, Chen X, Labgaa I, Haber P, Olsen R, Han D, Restrepo P, D'Avola D, Hernandez-Meza G, Allette K, Sebra R, Saberi B, Tabrizian P, Asgharpour A, Dieterich D, Llovet JM, Cordon-Cardo C, Tewari A, Schwartz M, Stolovitzky G, Losic B, Villanueva A. von Felden J, et al. Among authors: ahsen me. Gut. 2021 Jul 28:gutjnl-2021-325036. doi: 10.1136/gutjnl-2021-325036. Online ahead of print. Gut. 2021. PMID: 34321221 Free PMC article.
Transcriptomic characterization of cancer-testis antigens identifies MAGEA3 as a driver of tumor progression in hepatocellular carcinoma.
Craig AJ, Garcia-Lezana T, Ruiz de Galarreta M, Villacorta-Martin C, Kozlova EG, Martins-Filho SN, von Felden J, Ahsen ME, Bresnahan E, Hernandez-Meza G, Labgaa I, D'Avola D, Schwartz M, Llovet JM, Sia D, Thung S, Losic B, Lujambio A, Villanueva A. Craig AJ, et al. Among authors: ahsen me. PLoS Genet. 2021 Jun 24;17(6):e1009589. doi: 10.1371/journal.pgen.1009589. eCollection 2021 Jun. PLoS Genet. 2021. PMID: 34166362 Free PMC article.
A community challenge to evaluate RNA-seq, fusion detection, and isoform quantification methods for cancer discovery.
Creason A, Haan D, Dang K, Chiotti KE, Inkman M, Lamb A, Yu T, Hu Y, Norman TC, Buchanan A, van Baren MJ, Spangler R, Rollins MR, Spellman PT, Rozanov D, Zhang J, Maher CA, Caloian C, Watson JD, Uhrig S, Haas BJ, Jain M, Akeson M, Ahsen ME; SMC-RNA Challenge Participants; Stolovitzky G, Guinney J, Boutros PC, Stuart JM, Ellrott K. Creason A, et al. Among authors: ahsen me. Cell Syst. 2021 Aug 18;12(8):827-838.e5. doi: 10.1016/j.cels.2021.05.021. Epub 2021 Jun 18. Cell Syst. 2021. PMID: 34146471 Free PMC article.
Evaluation of artificial intelligence systems for assisting neurologists with fast and accurate annotations of scalp electroencephalography data.
Roy S, Kiral I, Mirmomeni M, Mummert T, Braz A, Tsay J, Tang J, Asif U, Schaffter T, Ahsen ME, Iwamori T, Yanagisawa H, Poonawala H, Madan P, Qin Y, Picone J, Obeid I, Marques BA, Maetschke S, Khalaf R, Rosen-Zvi M, Stolovitzky G, Harrer S; IBM Epilepsy Consortium. Roy S, et al. Among authors: ahsen me. EBioMedicine. 2021 Apr;66:103275. doi: 10.1016/j.ebiom.2021.103275. Epub 2021 Mar 18. EBioMedicine. 2021. PMID: 33745882 Free PMC article.
28 results