Aerssens J - Search Results

1

A method enabling high-throughput sequencing of human cytomegalovirus complete genomes from clinical isolates.

Sijmons S, Thys K, Corthout M, Van Damme E, Van Loock M, Bollen S, Baguet S, Aerssens J, Van Ranst M, Maes P. Sijmons S, et al. Among authors: aerssens j. PLoS One. 2014 Apr 22;9(4):e95501. doi: 10.1371/journal.pone.0095501. eCollection 2014. PLoS One. 2014. PMID: 24755734 Free PMC article.

2

Performance assessment of the Illumina massively parallel sequencing platform for deep sequencing analysis of viral minority variants.

Thys K, Verhasselt P, Reumers J, Verbist BM, Maes B, Aerssens J. Thys K, et al. Among authors: aerssens j. J Virol Methods. 2015 Sep 1;221:29-38. doi: 10.1016/j.jviromet.2015.04.022. Epub 2015 Apr 25. J Virol Methods. 2015. PMID: 25917877

3

High-throughput analysis of human cytomegalovirus genome diversity highlights the widespread occurrence of gene-disrupting mutations and pervasive recombination.

Sijmons S, Thys K, Mbong Ngwese M, Van Damme E, Dvorak J, Van Loock M, Li G, Tachezy R, Busson L, Aerssens J, Van Ranst M, Maes P. Sijmons S, et al. Among authors: aerssens j. J Virol. 2015 Aug 1;89(15):7673-7695. doi: 10.1128/JVI.00578-15. Epub 2015 May 13. J Virol. 2015. PMID: 25972543 Free PMC article.

4

HCMV Displays a Unique Transcriptome of Immunomodulatory Genes in Primary Monocyte-Derived Cell Types.

Van Damme E, Thys K, Tuefferd M, Van Hove C, Aerssens J, Van Loock M. Van Damme E, et al. Among authors: aerssens j. PLoS One. 2016 Oct 19;11(10):e0164843. doi: 10.1371/journal.pone.0164843. eCollection 2016. PLoS One. 2016. PMID: 27760232 Free PMC article.

5

Deep-sequencing analysis of the gene encoding the hepatitis C virus nonstructural 3-4A protease confirms a low prevalence of telaprevir-resistant variants at baseline and the end of the REALIZE study.

Dierynck I, Thys K, Ghys A, Sullivan JC, Kieffer TL, Aerssens J, Picchio G, De Meyer S. Dierynck I, et al. Among authors: aerssens j. J Infect Dis. 2014 Dec 15;210(12):1871-80. doi: 10.1093/infdis/jiu340. Epub 2014 Jun 18. J Infect Dis. 2014. PMID: 24943725 Clinical Trial.

6

Deep sequencing analysis of HIV-1 reverse transcriptase at baseline and time of failure in patients receiving rilpivirine in the phase III studies ECHO and THRIVE.

Van Eygen V, Thys K, Van Hove C, Rimsky LT, De Meyer S, Aerssens J, Picchio G, Vingerhoets J. Van Eygen V, et al. Among authors: aerssens j. J Med Virol. 2016 May;88(5):798-806. doi: 10.1002/jmv.24395. Epub 2015 Oct 5. J Med Virol. 2016. PMID: 26412111

7

QQ-SNV: single nucleotide variant detection at low frequency by comparing the quality quantiles.

Van der Borght K, Thys K, Wetzels Y, Clement L, Verbist B, Reumers J, van Vlijmen H, Aerssens J. Van der Borght K, et al. Among authors: aerssens j. BMC Bioinformatics. 2015 Nov 10;16:379. doi: 10.1186/s12859-015-0812-9. BMC Bioinformatics. 2015. PMID: 26554718 Free PMC article.

8

HIV-1 nucleotide mixture detection in the virco(®)TYPE HIV-1 genotyping assay: a comparison between Sanger sequencing and 454 pyrosequencing.

De Wolf H, Van Marck H, Mostmans W, Thys K, Vandenbroucke I, Van Eygen V, Pattery T, Verhasselt P, Aerssens J. De Wolf H, et al. Among authors: aerssens j. J Virol Methods. 2011 Jul;175(1):129-32. doi: 10.1016/j.jviromet.2011.04.023. Epub 2011 Apr 27. J Virol Methods. 2011. PMID: 21549149

9

Minor variant detection in amplicons using 454 massive parallel pyrosequencing: experiences and considerations for successful applications.

Vandenbroucke I, Van Marck H, Verhasselt P, Thys K, Mostmans W, Dumont S, Van Eygen V, Coen K, Tuefferd M, Aerssens J. Vandenbroucke I, et al. Among authors: aerssens j. Biotechniques. 2011 Sep;51(3):167-77. doi: 10.2144/000113733. Biotechniques. 2011. PMID: 21906038 Free article.

10

VirVarSeq: a low-frequency virus variant detection pipeline for Illumina sequencing using adaptive base-calling accuracy filtering.

Verbist BM, Thys K, Reumers J, Wetzels Y, Van der Borght K, Talloen W, Aerssens J, Clement L, Thas O. Verbist BM, et al. Among authors: aerssens j. Bioinformatics. 2015 Jan 1;31(1):94-101. doi: 10.1093/bioinformatics/btu587. Epub 2014 Aug 31. Bioinformatics. 2015. PMID: 25178459

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