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MAKER-P: a tool kit for the rapid creation, management, and quality control of plant genome annotations.
Plant Physiol. 2014 Feb;164(2):513-24. doi: 10.1104/pp.113.230144. Epub 2013 Dec 4.
Plant Physiol. 2014.
PMID: 24306534
Free PMC article.
Shape and secondary structure prediction for ncRNAs including pseudoknots based on linear SVM.
Achawanantakun R, Sun Y.
Achawanantakun R, et al.
BMC Bioinformatics. 2013;14 Suppl 2(Suppl 2):S1. doi: 10.1186/1471-2105-14-S2-S1. Epub 2013 Jan 21.
BMC Bioinformatics. 2013.
PMID: 23369147
Free PMC article.
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Genome, functional gene annotation, and nuclear transformation of the heterokont oleaginous alga Nannochloropsis oceanica CCMP1779.
Vieler A, Wu G, Tsai CH, Bullard B, Cornish AJ, Harvey C, Reca IB, Thornburg C, Achawanantakun R, Buehl CJ, Campbell MS, Cavalier D, Childs KL, Clark TJ, Deshpande R, Erickson E, Armenia Ferguson A, Handee W, Kong Q, Li X, Liu B, Lundback S, Peng C, Roston RL, Sanjaya, Simpson JP, Terbush A, Warakanont J, Zäuner S, Farre EM, Hegg EL, Jiang N, Kuo MH, Lu Y, Niyogi KK, Ohlrogge J, Osteryoung KW, Shachar-Hill Y, Sears BB, Sun Y, Takahashi H, Yandell M, Shiu SH, Benning C.
Vieler A, et al. Among authors: achawanantakun r.
PLoS Genet. 2012;8(11):e1003064. doi: 10.1371/journal.pgen.1003064. Epub 2012 Nov 15.
PLoS Genet. 2012.
PMID: 23166516
Free PMC article.
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ncRNA consensus secondary structure derivation using grammar strings.
Achawanantakun R, Sun Y, Takyar SS.
Achawanantakun R, et al.
J Bioinform Comput Biol. 2011 Apr;9(2):317-37. doi: 10.1142/s0219720011005501.
J Bioinform Comput Biol. 2011.
PMID: 21523935
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LncRNA-ID: Long non-coding RNA IDentification using balanced random forests.
Achawanantakun R, Chen J, Sun Y, Zhang Y.
Achawanantakun R, et al.
Bioinformatics. 2015 Dec 15;31(24):3897-905. doi: 10.1093/bioinformatics/btv480. Epub 2015 Aug 26.
Bioinformatics. 2015.
PMID: 26315901
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Correction: Genome, Functional Gene Annotation, and Nuclear Transformation of the Heterokont Oleaginous Alga Nannochloropsis oceanica CCMP1779.
Vieler A, Wu G, Tsai CH, Bullard B, Cornish AJ, Harvey C, Reca IB, Thornburg C, Achawanantakun R, Buehl CJ, Campbell MS, Cavalier D, Childs KL, Clark TJ, Deshpande R, Erickson E, Armenia Ferguson A, Handee W, Kong Q, Li X, Liu B, Lundback S, Peng C, Roston RL, Sanjaya, Simpson JP, TerBush A, Warakanont J, Zäuner S, Farre EM, Hegg EL, Jiang N, Kuo MH, Lu Y, Niyogi KK, Ohlrogge J, Osteryoung KW, Shachar-Hill Y, Sears BB, Sun Y, Takahashi H, Yandell M, Shiu SH, Benning C.
Vieler A, et al. Among authors: achawanantakun r.
PLoS Genet. 2017 May 23;13(5):e1006802. doi: 10.1371/journal.pgen.1006802. eCollection 2017 May.
PLoS Genet. 2017.
PMID: 28542203
Free PMC article.
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Analysis of the canine brain transcriptome with an emphasis on the hypothalamus and cerebral cortex.
Roy M, Kim N, Kim K, Chung WH, Achawanantakun R, Sun Y, Wayne R.
Roy M, et al. Among authors: achawanantakun r.
Mamm Genome. 2013 Dec;24(11-12):484-99. doi: 10.1007/s00335-013-9480-0. Epub 2013 Nov 8.
Mamm Genome. 2013.
PMID: 24202129
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