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Decisive data sets in phylogenomics: lessons from studies on the phylogenetic relationships of primarily wingless insects.
Dell'Ampio E, Meusemann K, Szucsich NU, Peters RS, Meyer B, Borner J, Petersen M, Aberer AJ, Stamatakis A, Walzl MG, Minh BQ, von Haeseler A, Ebersberger I, Pass G, Misof B. Dell'Ampio E, et al. Among authors: aberer aj. Mol Biol Evol. 2014 Jan;31(1):239-49. doi: 10.1093/molbev/mst196. Epub 2013 Oct 18. Mol Biol Evol. 2014. PMID: 24140757 Free PMC article.
Phylogenomics resolves the timing and pattern of insect evolution.
Misof B, Liu S, Meusemann K, Peters RS, Donath A, Mayer C, Frandsen PB, Ware J, Flouri T, Beutel RG, Niehuis O, Petersen M, Izquierdo-Carrasco F, Wappler T, Rust J, Aberer AJ, Aspöck U, Aspöck H, Bartel D, Blanke A, Berger S, Böhm A, Buckley TR, Calcott B, Chen J, Friedrich F, Fukui M, Fujita M, Greve C, Grobe P, Gu S, Huang Y, Jermiin LS, Kawahara AY, Krogmann L, Kubiak M, Lanfear R, Letsch H, Li Y, Li Z, Li J, Lu H, Machida R, Mashimo Y, Kapli P, McKenna DD, Meng G, Nakagaki Y, Navarrete-Heredia JL, Ott M, Ou Y, Pass G, Podsiadlowski L, Pohl H, von Reumont BM, Schütte K, Sekiya K, Shimizu S, Slipinski A, Stamatakis A, Song W, Su X, Szucsich NU, Tan M, Tan X, Tang M, Tang J, Timelthaler G, Tomizuka S, Trautwein M, Tong X, Uchifune T, Walzl MG, Wiegmann BM, Wilbrandt J, Wipfler B, Wong TK, Wu Q, Wu G, Xie Y, Yang S, Yang Q, Yeates DK, Yoshizawa K, Zhang Q, Zhang R, Zhang W, Zhang Y, Zhao J, Zhou C, Zhou L, Ziesmann T, Zou S, Li Y, Xu X, Zhang Y, Yang H, Wang J, Wang J, Kjer KM, Zhou X. Misof B, et al. Among authors: aberer aj. Science. 2014 Nov 7;346(6210):763-7. doi: 10.1126/science.1257570. Epub 2014 Nov 6. Science. 2014. PMID: 25378627
The phylogenetic likelihood library.
Flouri T, Izquierdo-Carrasco F, Darriba D, Aberer AJ, Nguyen LT, Minh BQ, Von Haeseler A, Stamatakis A. Flouri T, et al. Among authors: aberer aj. Syst Biol. 2015 Mar;64(2):356-62. doi: 10.1093/sysbio/syu084. Epub 2014 Oct 30. Syst Biol. 2015. PMID: 25358969 Free PMC article.
The evolutionary history of holometabolous insects inferred from transcriptome-based phylogeny and comprehensive morphological data.
Peters RS, Meusemann K, Petersen M, Mayer C, Wilbrandt J, Ziesmann T, Donath A, Kjer KM, Aspöck U, Aspöck H, Aberer A, Stamatakis A, Friedrich F, Hünefeld F, Niehuis O, Beutel RG, Misof B. Peters RS, et al. BMC Evol Biol. 2014 Mar 20;14(1):52. doi: 10.1186/1471-2148-14-52. BMC Evol Biol. 2014. PMID: 24646345 Free PMC article.
Uncovering hidden phylogenetic consensus in large data sets.
Pattengale ND, Aberer AJ, Swenson KM, Stamatakis A, Moret BM. Pattengale ND, et al. Among authors: aberer aj. IEEE/ACM Trans Comput Biol Bioinform. 2011 Jul-Aug;8(4):902-11. doi: 10.1109/TCBB.2011.28. IEEE/ACM Trans Comput Biol Bioinform. 2011. PMID: 21301032
Phylogenomic analyses data of the avian phylogenomics project.
Jarvis ED, Mirarab S, Aberer AJ, Li B, Houde P, Li C, Ho SY, Faircloth BC, Nabholz B, Howard JT, Suh A, Weber CC, da Fonseca RR, Alfaro-Núñez A, Narula N, Liu L, Burt D, Ellegren H, Edwards SV, Stamatakis A, Mindell DP, Cracraft J, Braun EL, Warnow T, Jun W, Gilbert MT, Zhang G; Avian Phylogenomics Consortium. Jarvis ED, et al. Among authors: aberer aj. Gigascience. 2015 Feb 12;4:4. doi: 10.1186/s13742-014-0038-1. eCollection 2015. Gigascience. 2015. PMID: 25741440 Free PMC article.
14 results