Abecasis AB - Search Results

1

VIRULIGN: fast codon-correct alignment and annotation of viral genomes.

Libin PJK, Deforche K, Abecasis AB, Theys K. Libin PJK, et al. Among authors: abecasis ab. Bioinformatics. 2019 May 15;35(10):1763-1765. doi: 10.1093/bioinformatics/bty851. Bioinformatics. 2019. PMID: 30295730 Free PMC article.

2

An Evolutionary Model-Based Approach To Quantify the Genetic Barrier to Drug Resistance in Fast-Evolving Viruses and Its Application to HIV-1 Subtypes and Integrase Inhibitors.

Theys K, Libin PJK, Van Laethem K, Abecasis AB. Theys K, et al. Among authors: abecasis ab. Antimicrob Agents Chemother. 2019 Jul 25;63(8):e00539-19. doi: 10.1128/AAC.00539-19. Print 2019 Aug. Antimicrob Agents Chemother. 2019. PMID: 31109980 Free PMC article.

3

The rise and fall of K65R in a Portuguese HIV-1 Drug Resistance database, despite continuously increasing use of tenofovir.

Theys K, Vercauteren J, Abecasis AB, Libin P, Deforche K, Vandamme AM, Camacho R. Theys K, et al. Among authors: abecasis ab. Infect Genet Evol. 2009 Jul;9(4):683-8. doi: 10.1016/j.meegid.2008.10.013. Epub 2008 Nov 6. Infect Genet Evol. 2009. PMID: 19038365

4

Comparative performance of the REGA subtyping tool version 2 versus version 1.

Abecasis AB, Wang Y, Libin P, Imbrechts S, de Oliveira T, Camacho RJ, Vandamme AM. Abecasis AB, et al. Infect Genet Evol. 2010 Apr;10(3):380-5. doi: 10.1016/j.meegid.2009.09.020. Epub 2009 Oct 12. Infect Genet Evol. 2010. PMID: 19822224

5

Lack of evidence for the selection of E138 mutations by first-generation non-nucleoside reverse transcriptase inhibitors in patients infected with HIV-1 non-B subtypes.

Abecasis AB, van Laethem K, Theys K. Abecasis AB, et al. AIDS. 2015 May 15;29(8):987-8. doi: 10.1097/QAD.0000000000000627. AIDS. 2015. PMID: 25909833 No abstract available.

6

Zika genomics urgently need standardized and curated reference sequences.

Theys K, Libin P, Dallmeier K, Pineda-Peña AC, Vandamme AM, Cuypers L, Abecasis AB. Theys K, et al. Among authors: abecasis ab. PLoS Pathog. 2017 Sep 7;13(9):e1006528. doi: 10.1371/journal.ppat.1006528. eCollection 2017 Sep. PLoS Pathog. 2017. PMID: 28880955 Free PMC article. No abstract available.

7

The impact of HIV-1 within-host evolution on transmission dynamics.

Theys K, Libin P, Pineda-Peña AC, Nowé A, Vandamme AM, Abecasis AB. Theys K, et al. Among authors: abecasis ab. Curr Opin Virol. 2018 Feb;28:92-101. doi: 10.1016/j.coviro.2017.12.001. Epub 2017 Dec 21. Curr Opin Virol. 2018. PMID: 29275182 Free article. Review.

8

Genome-wide diversity of Zika virus: Exploring spatio-temporal dynamics to guide a new nomenclature proposal.

Seabra SG, Libin PJK, Theys K, Zhukova A, Potter BI, Nebenzahl-Guimaraes H, Gorbalenya AE, Sidorov IA, Pimentel V, Pingarilho M, de Vasconcelos ATR, Dellicour S, Khouri R, Gascuel O, Vandamme AM, Baele G, Cuypers L, Abecasis AB. Seabra SG, et al. Among authors: abecasis ab. Virus Evol. 2022 Mar 29;8(1):veac029. doi: 10.1093/ve/veac029. eCollection 2022. Virus Evol. 2022. PMID: 35478717 Free PMC article.

9

A Tale of Three Recent Pandemics: Influenza, HIV and SARS-CoV-2.

Miranda MNS, Pingarilho M, Pimentel V, Torneri A, Seabra SG, Libin PJK, Abecasis AB. Miranda MNS, et al. Among authors: abecasis ab. Front Microbiol. 2022 Jun 2;13:889643. doi: 10.3389/fmicb.2022.889643. eCollection 2022. Front Microbiol. 2022. PMID: 35722303 Free PMC article. Review.

10

Automated subtyping of HIV-1 genetic sequences for clinical and surveillance purposes: performance evaluation of the new REGA version 3 and seven other tools.

Pineda-Peña AC, Faria NR, Imbrechts S, Libin P, Abecasis AB, Deforche K, Gómez-López A, Camacho RJ, de Oliveira T, Vandamme AM. Pineda-Peña AC, et al. Among authors: abecasis ab. Infect Genet Evol. 2013 Oct;19:337-48. doi: 10.1016/j.meegid.2013.04.032. Epub 2013 May 7. Infect Genet Evol. 2013. PMID: 23660484 Free article.

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