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Genomic analysis of Salmonella isolated from canal water in Bangkok, Thailand.
Toyting J, Nuanmuang N, Utrarachkij F, Supha N, Thongpanich Y, Leekitcharoenphon P, Aarestrup FM, Sato T, Thapa J, Nakajima C, Suzuki Y. Toyting J, et al. Among authors: aarestrup fm. Microbiol Spectr. 2024 May 2;12(5):e0421623. doi: 10.1128/spectrum.04216-23. Epub 2024 Apr 2. Microbiol Spectr. 2024. PMID: 38563788 Free PMC article.
Dispersion of antimicrobial resistant bacteria in pig farms and in the surrounding environment.
Scicchitano D, Leuzzi D, Babbi G, Palladino G, Turroni S, Laczny CC, Wilmes P, Correa F, Leekitcharoenphon P, Savojardo C, Luise D, Martelli P, Trevisi P, Aarestrup FM, Candela M, Rampelli S. Scicchitano D, et al. Among authors: aarestrup fm. Anim Microbiome. 2024 Mar 30;6(1):17. doi: 10.1186/s42523-024-00305-8. Anim Microbiome. 2024. PMID: 38555432 Free PMC article.
The European livestock resistome.
Munk P, Yang D, Röder T, Maier L, Petersen TN, Duarte ASR, Clausen PTLC, Brinch C, Van Gompel L, Luiken R, Wagenaar JA, Schmitt H, Heederik DJJ, Mevius DJ, Smit LAM; EFFORT Consortium; Bossers A, Aarestrup FM. Munk P, et al. Among authors: aarestrup fm. mSystems. 2024 Apr 16;9(4):e0132823. doi: 10.1128/msystems.01328-23. Epub 2024 Mar 19. mSystems. 2024. PMID: 38501800 Free PMC article.
Ongoing mpox outbreak in Kamituga, South Kivu province, associated with monkeypox virus of a novel Clade I sub-lineage, Democratic Republic of the Congo, 2024.
Masirika LM, Udahemuka JC, Schuele L, Ndishimye P, Otani S, Mbiribindi JB, Marekani JM, Mambo LM, Bubala NM, Boter M, Nieuwenhuijse DF, Lang T, Kalalizi EB, Musabyimana JP, Aarestrup FM, Koopmans M, Oude Munnink BB, Siangoli FB. Masirika LM, et al. Among authors: aarestrup fm. Euro Surveill. 2024 Mar;29(11):2400106. doi: 10.2807/1560-7917.ES.2024.29.11.2400106. Euro Surveill. 2024. PMID: 38487886 Free PMC article.
A novel metagenomic approach uncovers phage genes as markers for increased disinfectant tolerance in mixed Listeria monocytogenes communities.
Karlsmose AK, Ivanova M, Kragh ML, Kjeldgaard JS, Otani S, Svendsen CA, Papić B, Zdovc I, Tasara T, Stephan R, Heir E, Langsrud S, Møretrø T, Dalgaard P, Fagerlund A, Hansen LT, Aarestrup FM, Leekitcharoenphon P. Karlsmose AK, et al. Among authors: aarestrup fm. Infect Genet Evol. 2024 Apr;119:105582. doi: 10.1016/j.meegid.2024.105582. Epub 2024 Mar 11. Infect Genet Evol. 2024. PMID: 38467173 Free article.
Mobilisation and analyses of publicly available SARS-CoV-2 data for pandemic responses.
Rahman N, O'Cathail C, Zyoud A, Sokolov A, Oude Munnink B, Grüning B, Cummins C, Amid C, Nieuwenhuijse DF, Visontai D, Yuan DY, Gupta D, Prasad DK, Gulyás GM, Rinck G, McKinnon J, Rajan J, Knaggs J, Skiby JE, Stéger J, Szarvas J, Gueye K, Papp K, Hoek M, Kumar M, Ventouratou MA, Bouquieaux MC, Koliba M, Mansurova M, Haseeb M, Worp N, Harrison PW, Leinonen R, Thorne R, Selvakumar S, Hunt S, Venkataraman S, Jayathilaka S, Cezard T, Maier W, Waheed Z, Iqbal Z, Aarestrup FM, Csabai I, Koopmans M, Burdett T, Cochrane G. Rahman N, et al. Among authors: aarestrup fm. Microb Genom. 2024 Feb;10(2):001188. doi: 10.1099/mgen.0.001188. Microb Genom. 2024. PMID: 38358325 Free PMC article.
VirulenceFinder for Enterococcus faecium and Enterococcus lactis: an enhanced database for detection of putative virulence markers by using whole-genome sequencing data.
Roer L, Kaya H, Tedim AP, Novais C, Coque TM, Aarestrup FM, Peixe L, Hasman H, Hammerum AM, Freitas AR; ESCMID Study Group for Epidemiological Markers (ESGEM). Roer L, et al. Among authors: aarestrup fm. Microbiol Spectr. 2024 Mar 5;12(3):e0372423. doi: 10.1128/spectrum.03724-23. Epub 2024 Feb 8. Microbiol Spectr. 2024. PMID: 38329344 Free PMC article.
475 results