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ChIP-seq of plasma cell-free nucleosomes identifies gene expression programs of the cells of origin.
Sadeh R, Sharkia I, Fialkoff G, Rahat A, Gutin J, Chappleboim A, Nitzan M, Fox-Fisher I, Neiman D, Meler G, Kamari Z, Yaish D, Peretz T, Hubert A, Cohen JE, Salah A, Temper M, Grinshpun A, Maoz M, Abu-Gazala S, Ben Ya'acov A, Shteyer E, Safadi R, Kaplan T, Shemer R, Planer D, Galun E, Glaser B, Zick A, Dor Y, Friedman N. Sadeh R, et al. Nat Biotechnol. 2021 May;39(5):586-598. doi: 10.1038/s41587-020-00775-6. Epub 2021 Jan 11. Nat Biotechnol. 2021. PMID: 33432199 Free PMC article.
A synthetic biology approach to probing nucleosome symmetry.
Ichikawa Y, Connelly CF, Appleboim A, Miller TC, Jacobi H, Abshiru NA, Chou HJ, Chen Y, Sharma U, Zheng Y, Thomas PM, Chen HV, Bajaj V, Müller CW, Kelleher NL, Friedman N, Bolon DN, Rando OJ, Kaufman PD. Ichikawa Y, et al. Elife. 2017 Sep 12;6:e28836. doi: 10.7554/eLife.28836. Elife. 2017. PMID: 28895528 Free PMC article.
High-resolution chromatin dynamics during a yeast stress response.
Weiner A, Hsieh TH, Appleboim A, Chen HV, Rahat A, Amit I, Rando OJ, Friedman N. Weiner A, et al. Mol Cell. 2015 Apr 16;58(2):371-86. doi: 10.1016/j.molcel.2015.02.002. Epub 2015 Mar 19. Mol Cell. 2015. PMID: 25801168 Free PMC article.
Immunogenetics. Chromatin state dynamics during blood formation.
Lara-Astiaso D, Weiner A, Lorenzo-Vivas E, Zaretsky I, Jaitin DA, David E, Keren-Shaul H, Mildner A, Winter D, Jung S, Friedman N, Amit I. Lara-Astiaso D, et al. Science. 2014 Aug 22;345(6199):943-9. doi: 10.1126/science.1256271. Epub 2014 Aug 7. Science. 2014. PMID: 25103404 Free PMC article.