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BS-SNPer: SNP calling in bisulfite-seq data.
Gao S, Zou D, Mao L, Liu H, Song P, Chen Y, Zhao S, Gao C, Li X, Gao Z, Fang X, Yang H, Ørntoft TF, Sørensen KD, Bolund L. Gao S, et al. Among authors: orntoft tf. Bioinformatics. 2015 Dec 15;31(24):4006-8. doi: 10.1093/bioinformatics/btv507. Epub 2015 Aug 28. Bioinformatics. 2015. PMID: 26319221 Free PMC article.
SMAP: a streamlined methylation analysis pipeline for bisulfite sequencing.
Gao S, Zou D, Mao L, Zhou Q, Jia W, Huang Y, Zhao S, Chen G, Wu S, Li D, Xia F, Chen H, Chen M, Ørntoft TF, Bolund L, Sørensen KD. Gao S, et al. Among authors: orntoft tf. Gigascience. 2015 Jul 1;4:29. doi: 10.1186/s13742-015-0070-9. eCollection 2015. Gigascience. 2015. PMID: 26140213 Free PMC article. Review.
Prognostic DNA methylation markers for prostate cancer.
Strand SH, Orntoft TF, Sorensen KD. Strand SH, et al. Among authors: orntoft tf. Int J Mol Sci. 2014 Sep 18;15(9):16544-76. doi: 10.3390/ijms150916544. Int J Mol Sci. 2014. PMID: 25238417 Free PMC article. Review.
Rseg--an R package to optimize segmentation of SNP array data.
Lamy P, Wiuf C, Ørntoft TF, Andersen CL. Lamy P, et al. Among authors: orntoft tf. Bioinformatics. 2011 Feb 1;27(3):419-20. doi: 10.1093/bioinformatics/btq668. Epub 2010 Dec 5. Bioinformatics. 2011. PMID: 21134892
Downregulation of zinc finger protein 132 in prostate cancer is associated with aberrant promoter hypermethylation and poor prognosis.
Abildgaard MO, Borre M, Mortensen MM, Ulhøi BP, Tørring N, Wild P, Kristensen H, Mansilla F, Ottosen PD, Dyrskjøt L, Ørntoft TF, Sørensen KD. Abildgaard MO, et al. Among authors: orntoft tf. Int J Cancer. 2012 Feb 15;130(4):885-95. doi: 10.1002/ijc.26097. Epub 2011 May 25. Int J Cancer. 2012. PMID: 21445975 Free article.
379 results