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2016 7
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2020 7
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The ClusPro web server for protein-protein docking.
Kozakov D, Hall DR, Xia B, Porter KA, Padhorny D, Yueh C, Beglov D, Vajda S. Kozakov D, et al. Nat Protoc. 2017 Feb;12(2):255-278. doi: 10.1038/nprot.2016.169. Epub 2017 Jan 12. Nat Protoc. 2017. PMID: 28079879 Free PMC article.
High Accuracy Prediction of PROTAC Complex Structures.
Ignatov M, Jindal A, Kotelnikov S, Beglov D, Posternak G, Tang X, Maisonneuve P, Poda G, Batey RA, Sicheri F, Whitty A, Tonge PJ, Vajda S, Kozakov D. Ignatov M, et al. J Am Chem Soc. 2023 Apr 5;145(13):7123-7135. doi: 10.1021/jacs.2c09387. Epub 2023 Mar 24. J Am Chem Soc. 2023. PMID: 36961978 Free PMC article.
Challenges in structural approaches to cell modeling.
Im W, Liang J, Olson A, Zhou HX, Vajda S, Vakser IA. Im W, et al. J Mol Biol. 2016 Jul 31;428(15):2943-64. doi: 10.1016/j.jmb.2016.05.024. Epub 2016 May 30. J Mol Biol. 2016. PMID: 27255863 Free PMC article. Review.
What method to use for protein-protein docking?
Porter KA, Desta I, Kozakov D, Vajda S. Porter KA, et al. Curr Opin Struct Biol. 2019 Apr;55:1-7. doi: 10.1016/j.sbi.2018.12.010. Epub 2019 Feb 1. Curr Opin Struct Biol. 2019. PMID: 30711743 Free PMC article. Review.
Mapping the binding sites of challenging drug targets.
Wakefield AE, Kozakov D, Vajda S. Wakefield AE, et al. Curr Opin Struct Biol. 2022 Aug;75:102396. doi: 10.1016/j.sbi.2022.102396. Epub 2022 May 27. Curr Opin Struct Biol. 2022. PMID: 35636004 Free PMC article. Review.
Kinase Atlas: Druggability Analysis of Potential Allosteric Sites in Kinases.
Yueh C, Rettenmaier J, Xia B, Hall DR, Alekseenko A, Porter KA, Barkovich K, Keseru G, Whitty A, Wells JA, Vajda S, Kozakov D. Yueh C, et al. J Med Chem. 2019 Jul 25;62(14):6512-6524. doi: 10.1021/acs.jmedchem.9b00089. Epub 2019 Jul 5. J Med Chem. 2019. PMID: 31274316 Free PMC article. Review.
53 results