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2021 1
2022 4
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2024 5

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14 results

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Page 1
Metagenomic prediction of antimicrobial resistance in critically ill patients with lower respiratory tract infections.
Serpa PH, Deng X, Abdelghany M, Crawford E, Malcolm K, Caldera S, Fung M, McGeever A, Kalantar KL, Lyden A, Ghale R, Deiss T, Neff N, Miller SA, Doernberg SB, Chiu CY, DeRisi JL, Calfee CS, Langelier CR. Serpa PH, et al. Genome Med. 2022 Jul 12;14(1):74. doi: 10.1186/s13073-022-01072-4. Genome Med. 2022. PMID: 35818068 Free PMC article.
Integrated host-microbe plasma metagenomics for sepsis diagnosis in a prospective cohort of critically ill adults.
Kalantar KL, Neyton L, Abdelghany M, Mick E, Jauregui A, Caldera S, Serpa PH, Ghale R, Albright J, Sarma A, Tsitsiklis A, Leligdowicz A, Christenson SA, Liu K, Kangelaris KN, Hendrickson C, Sinha P, Gomez A, Neff N, Pisco A, Doernberg SB, Derisi JL, Matthay MA, Calfee CS, Langelier CR. Kalantar KL, et al. Nat Microbiol. 2022 Nov;7(11):1805-1816. doi: 10.1038/s41564-022-01237-2. Epub 2022 Oct 20. Nat Microbiol. 2022. PMID: 36266337 Free PMC article. Clinical Trial.
Host and Microbe Blood Metagenomics Reveals Key Pathways Characterizing Critical Illness Phenotypes.
Neyton LPA, Sinha P, Sarma A, Mick E, Kalantar K, Chen S, Wu N, Delucchi K, Zhuo H, Bos LDJ, Jauregui A, Gomez A, Hendrickson CM, Kangelaris KN, Leligdowicz A, Liu KD, Matthay MA, Langelier CR, Calfee CS. Neyton LPA, et al. Am J Respir Crit Care Med. 2024 Apr 1;209(7):805-815. doi: 10.1164/rccm.202308-1328OC. Am J Respir Crit Care Med. 2024. PMID: 38190719
The antibiotic resistance reservoir of the lung microbiome expands with age.
Chu VT, Tsitsiklis A, Mick E, Ambroggio L, Kalantar KL, Glascock A, Osborne CM, Wagner BD, Matthay MA, DeRisi JL, Calfee CS, Mourani PM, Langelier CR. Chu VT, et al. Res Sq [Preprint]. 2023 Sep 18:rs.3.rs-3283415. doi: 10.21203/rs.3.rs-3283415/v1. Res Sq. 2023. PMID: 37790384 Free PMC article. Updated. Preprint.
Integrated host/microbe metagenomics enables accurate lower respiratory tract infection diagnosis in critically ill children.
Mick E, Tsitsiklis A, Kamm J, Kalantar KL, Caldera S, Lyden A, Tan M, Detweiler AM, Neff N, Osborne CM, Williamson KM, Soesanto V, Leroue M, Maddux AB, Simões EA, Carpenter TC, Wagner BD, DeRisi JL, Ambroggio L, Mourani PM, Langelier CR. Mick E, et al. J Clin Invest. 2023 Apr 3;133(7):e165904. doi: 10.1172/JCI165904. J Clin Invest. 2023. PMID: 37009900 Free PMC article.
Simultaneous detection of pathogens and antimicrobial resistance genes with the open source, cloud-based, CZ ID pipeline.
Lu D, Kalantar KL, Chu VT, Glascock AL, Guerrero ES, Bernick N, Butcher X, Ewing K, Fahsbender E, Holmes O, Hoops E, Jones AE, Lim R, McCanny S, Reynoso L, Rosario K, Tang J, Valenzuela O, Mourani PM, Pickering AJ, Raphenya AR, Alcock BP, McArthur AG, Langelier CR. Lu D, et al. bioRxiv [Preprint]. 2024 Apr 18:2024.04.12.589250. doi: 10.1101/2024.04.12.589250. bioRxiv. 2024. PMID: 38645206 Free PMC article. Preprint.
Simultaneous detection of pathogens and antimicrobial resistance genes with the open source, cloud-based, CZ ID pipeline.
Langelier C, Lu D, Kalantar K, Chu V, Glascock A, Guerrero E, Bernick N, Butcher X, Ewing K, Fahsbender E, Holmes O, Hoops E, Jones A, Lim R, McCanny S, Reynoso L, Rosario K, Tang J, Valenzuela O, Mourani P, Pickering A, Raphenya A, Alcock B, McArthur A. Langelier C, et al. Res Sq [Preprint]. 2024 May 2:rs.3.rs-4271356. doi: 10.21203/rs.3.rs-4271356/v1. Res Sq. 2024. PMID: 38746293 Free PMC article. Preprint.
Lower respiratory tract infections in children requiring mechanical ventilation: a multicentre prospective surveillance study incorporating airway metagenomics.
Tsitsiklis A, Osborne CM, Kamm J, Williamson K, Kalantar K, Dudas G, Caldera S, Lyden A, Tan M, Neff N, Soesanto V, Harris JK, Ambroggio L, Maddux AB, Carpenter TC, Reeder RW, Locandro C, Simões EAF, Leroue MK, Hall MW, Zuppa AF, Carcillo J, Meert KL, Sapru A, Pollack MM, McQuillen PS, Notterman DA, Dean JM, Zinter MS, Wagner BD, DeRisi JL, Mourani PM, Langelier CR. Tsitsiklis A, et al. Lancet Microbe. 2022 Apr;3(4):e284-e293. doi: 10.1016/S2666-5247(21)00304-9. Epub 2022 Mar 9. Lancet Microbe. 2022. PMID: 35544065 Free PMC article.
Upper airway gene expression shows a more robust adaptive immune response to SARS-CoV-2 in children.
Mick E, Tsitsiklis A, Spottiswoode N, Caldera S, Serpa PH, Detweiler AM, Neff N, Pisco AO, Li LM, Retallack H, Ratnasiri K, Williamson KM, Soesanto V, Simões EAF, Smith C, Abuogi L, Kistler A, Wagner BD, DeRisi JL, Ambroggio L, Mourani PM, Langelier CR. Mick E, et al. Nat Commun. 2022 Jul 8;13(1):3937. doi: 10.1038/s41467-022-31600-0. Nat Commun. 2022. PMID: 35803954 Free PMC article.
14 results