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Interpreting Cis-Regulatory Interactions from Large-Scale Deep Neural Networks for Genomics.
bioRxiv [Preprint]. 2024 Mar 20:2023.07.03.547592. doi: 10.1101/2023.07.03.547592.
bioRxiv. 2024.
PMID: 37461616
Free PMC article.
Preprint.
EvoAug-TF: Extending evolution-inspired data augmentations for genomic deep learning to TensorFlow.
Yu Y, Muthukumar S, Koo PK.
Yu Y, et al.
bioRxiv [Preprint]. 2024 Jan 18:2024.01.17.575961. doi: 10.1101/2024.01.17.575961.
bioRxiv. 2024.
PMID: 38293144
Free PMC article.
Updated.
Preprint.
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Evaluating the representational power of pre-trained DNA language models for regulatory genomics.
Tang Z, Koo PK.
Tang Z, et al.
bioRxiv [Preprint]. 2024 Mar 3:2024.02.29.582810. doi: 10.1101/2024.02.29.582810.
bioRxiv. 2024.
PMID: 38464101
Free PMC article.
Preprint.
Item in Clipboard
Interpreting cis-regulatory mechanisms from genomic deep neural networks using surrogate models.
Seitz EE, McCandlish DM, Kinney JB, Koo PK.
Seitz EE, et al.
bioRxiv [Preprint]. 2024 Mar 2:2023.11.14.567120. doi: 10.1101/2023.11.14.567120.
bioRxiv. 2024.
PMID: 38013993
Free PMC article.
Preprint.
Item in Clipboard
EvoAug-TF: extending evolution-inspired data augmentations for genomic deep learning to TensorFlow.
Yu Y, Muthukumar S, Koo PK.
Yu Y, et al.
Bioinformatics. 2024 Mar 4;40(3):btae092. doi: 10.1093/bioinformatics/btae092.
Bioinformatics. 2024.
PMID: 38366935
Free PMC article.
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