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Page 1
Asymptotically optimal minimizers schemes.
Marçais G, DeBlasio D, Kingsford C. Marçais G, et al. Bioinformatics. 2018 Jul 1;34(13):i13-i22. doi: 10.1093/bioinformatics/bty258. Bioinformatics. 2018. PMID: 29949995 Free PMC article.
Context-aware seeds for read mapping.
Xin H, Shao M, Kingsford C. Xin H, et al. Algorithms Mol Biol. 2020 May 23;15:10. doi: 10.1186/s13015-020-00172-3. eCollection 2020. Algorithms Mol Biol. 2020. PMID: 32489399 Free PMC article.
Sequence-specific minimizers via polar sets.
Zheng H, Kingsford C, Marçais G. Zheng H, et al. Bioinformatics. 2021 Jul 12;37(Suppl_1):i187-i195. doi: 10.1093/bioinformatics/btab313. Bioinformatics. 2021. PMID: 34252928 Free PMC article.
Locality-sensitive hashing for the edit distance.
Marçais G, DeBlasio D, Pandey P, Kingsford C. Marçais G, et al. Bioinformatics. 2019 Jul 15;35(14):i127-i135. doi: 10.1093/bioinformatics/btz354. Bioinformatics. 2019. PMID: 31510667 Free PMC article.
Improved design and analysis of practical minimizers.
Zheng H, Kingsford C, Marçais G. Zheng H, et al. Bioinformatics. 2020 Jul 1;36(Suppl_1):i119-i127. doi: 10.1093/bioinformatics/btaa472. Bioinformatics. 2020. PMID: 32657376 Free PMC article.
Exact transcript quantification over splice graphs.
Ma C, Zheng H, Kingsford C. Ma C, et al. Algorithms Mol Biol. 2021 May 10;16(1):5. doi: 10.1186/s13015-021-00184-7. Algorithms Mol Biol. 2021. PMID: 33971903 Free PMC article.
27 results