R01 GM114864/GM/NIGMS NIH HHS/United States[Grants and Funding] - Search Results

Year	Number of Results
2015	1
2016	4
2017	2
2018	3
2019	1
2021	1
2022	1
2023	3
2024	1

1

Editing DNA Methylation in the Mammalian Genome.

Liu XS, Wu H, Ji X, Stelzer Y, Wu X, Czauderna S, Shu J, Dadon D, Young RA, Jaenisch R. Liu XS, et al. Cell. 2016 Sep 22;167(1):233-247.e17. doi: 10.1016/j.cell.2016.08.056. Cell. 2016. PMID: 27662091 Free PMC article.

2

Rescue of Fragile X Syndrome Neurons by DNA Methylation Editing of the FMR1 Gene.

Liu XS, Wu H, Krzisch M, Wu X, Graef J, Muffat J, Hnisz D, Li CH, Yuan B, Xu C, Li Y, Vershkov D, Cacace A, Young RA, Jaenisch R. Liu XS, et al. Cell. 2018 Feb 22;172(5):979-992.e6. doi: 10.1016/j.cell.2018.01.012. Epub 2018 Feb 15. Cell. 2018. PMID: 29456084 Free PMC article.

3

High prevalence of clonal monoallelic expression.

Vigneau S, Vinogradova S, Savova V, Gimelbrant A. Vigneau S, et al. Nat Genet. 2018 Sep;50(9):1198-1199. doi: 10.1038/s41588-018-0188-7. Nat Genet. 2018. PMID: 30082785 No abstract available.

4

Cell state transition analysis identifies interventions that improve control of Mycobacterium tuberculosis infection by susceptible macrophages.

Yabaji SM, Rukhlenko OS, Chatterjee S, Bhattacharya B, Wood E, Kasaikina M, Kholodenko BN, Gimelbrant AA, Kramnik I. Yabaji SM, et al. Sci Adv. 2023 Sep 29;9(39):eadh4119. doi: 10.1126/sciadv.adh4119. Epub 2023 Sep 27. Sci Adv. 2023. PMID: 37756395 Free PMC article.

5

dbMAE: the database of autosomal monoallelic expression.

Savova V, Patsenker J, Vigneau S, Gimelbrant AA. Savova V, et al. Nucleic Acids Res. 2016 Jan 4;44(D1):D753-6. doi: 10.1093/nar/gkv1106. Epub 2015 Oct 25. Nucleic Acids Res. 2016. PMID: 26503248 Free PMC article.

6

Replicate sequencing libraries are important for quantification of allelic imbalance.

Mendelevich A, Vinogradova S, Gupta S, Mironov AA, Sunyaev SR, Gimelbrant AA. Mendelevich A, et al. Nat Commun. 2021 Jun 7;12(1):3370. doi: 10.1038/s41467-021-23544-8. Nat Commun. 2021. PMID: 34099647 Free PMC article.

7

Foreign RNA spike-ins enable accurate allele-specific expression analysis at scale.

Mendelevich A, Gupta S, Pakharev A, Teodosiadis A, Mironov AA, Gimelbrant AA. Mendelevich A, et al. Bioinformatics. 2023 Jun 30;39(39 Suppl 1):i431-i439. doi: 10.1093/bioinformatics/btad254. Bioinformatics. 2023. PMID: 37387154 Free PMC article.

8

RNA sequencing-based screen for reactivation of silenced alleles of autosomal genes.

Gupta S, Lafontaine DL, Vigneau S, Mendelevich A, Vinogradova S, Igarashi KJ, Bortvin A, Alves-Pereira CF, Nag A, Gimelbrant AA. Gupta S, et al. G3 (Bethesda). 2022 Feb 4;12(2):jkab428. doi: 10.1093/g3journal/jkab428. G3 (Bethesda). 2022. PMID: 35100361 Free PMC article.

9

Foreign RNA spike-ins enable accurate allele-specific expression analysis at scale.

Mendelevich A, Gupta S, Pakharev A, Teodosiadis A, Mironov AA, Gimelbrant AA. Mendelevich A, et al. bioRxiv [Preprint]. 2023 Feb 12:2023.02.11.528027. doi: 10.1101/2023.02.11.528027. bioRxiv. 2023. PMID: 36798258 Free PMC article. Updated. Preprint.

10

Tumor-suppressor genes that escape from X-inactivation contribute to cancer sex bias.

Dunford A, Weinstock DM, Savova V, Schumacher SE, Cleary JP, Yoda A, Sullivan TJ, Hess JM, Gimelbrant AA, Beroukhim R, Lawrence MS, Getz G, Lane AA. Dunford A, et al. Nat Genet. 2017 Jan;49(1):10-16. doi: 10.1038/ng.3726. Epub 2016 Nov 21. Nat Genet. 2017. PMID: 27869828 Free PMC article.

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