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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
1975 1
1981 1
1984 1
1985 1
1988 1
1990 1
1993 3
1997 1
1998 3
1999 2
2000 5
2001 3
2002 14
2003 12
2004 9
2005 15
2006 13
2007 24
2008 34
2009 33
2010 36
2011 47
2012 43
2013 93
2014 105
2015 150
2016 187
2017 170
2018 224
2019 301
2020 321
2021 394
2022 500
2023 517
2024 280

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3,172 results

Results by year

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Page 1
Deep learning for mining protein data.
Shi Q, Chen W, Huang S, Wang Y, Xue Z. Shi Q, et al. Brief Bioinform. 2021 Jan 18;22(1):194-218. doi: 10.1093/bib/bbz156. Brief Bioinform. 2021. PMID: 31867611 Review.
The recent emergence of deep learning to characterize complex patterns of protein big data reveals its potential to address the classic challenges in the field of protein data mining. Much research has revealed the promise of deep learning as a powerful tool to transform p …
The recent emergence of deep learning to characterize complex patterns of protein big data reveals its potential to address the classic chal …
Identification of potent antimicrobial peptides via a machine-learning pipeline that mines the entire space of peptide sequences.
Huang J, Xu Y, Xue Y, Huang Y, Li X, Chen X, Xu Y, Zhang D, Zhang P, Zhao J, Ji J. Huang J, et al. Nat Biomed Eng. 2023 Jun;7(6):797-810. doi: 10.1038/s41551-022-00991-2. Epub 2023 Jan 12. Nat Biomed Eng. 2023. PMID: 36635418
Systematically identifying functional peptides is difficult owing to the vast combinatorial space of peptide sequences. Here we report a machine-learning pipeline that mines the hundreds of billions of sequences in the entire virtual library of peptides made of 6-9 amino a …
Systematically identifying functional peptides is difficult owing to the vast combinatorial space of peptide sequences. Here we report a mac …
BatteryDataExtractor: battery-aware text-mining software embedded with BERT models.
Huang S, Cole JM. Huang S, et al. Chem Sci. 2022 Sep 23;13(39):11487-11495. doi: 10.1039/d2sc04322j. eCollection 2022 Oct 12. Chem Sci. 2022. PMID: 36348711 Free PMC article.
Efforts in literature-mining software design and implementation have improved text-mining productivity, but most of the toolkits that mine text are based on traditional machine-learning-algorithms which hinder the performance of downstream text-mining tasks. …
Efforts in literature-mining software design and implementation have improved text-mining productivity, but most of the toolki …
Europe PMC in 2020.
Ferguson C, Araújo D, Faulk L, Gou Y, Hamelers A, Huang Z, Ide-Smith M, Levchenko M, Marinos N, Nambiar R, Nassar M, Parkin M, Pi X, Rahman F, Rogers F, Roochun Y, Saha S, Selim M, Shafique Z, Sharma S, Stephenson D, Talo' F, Thouvenin A, Tirunagari S, Vartak V, Venkatesan A, Yang X, McEntyre J. Ferguson C, et al. Nucleic Acids Res. 2021 Jan 8;49(D1):D1507-D1514. doi: 10.1093/nar/gkaa994. Nucleic Acids Res. 2021. PMID: 33180112 Free PMC article.
(iii) The expanded annotations platform offers 1.3 billion text mined biological terms and concepts sourced from 10 providers and over 40 global data resources....
(iii) The expanded annotations platform offers 1.3 billion text mined biological terms and concepts sourced from 10 providers and ove …
Community challenges in biomedical text mining over 10 years: success, failure and the future.
Huang CC, Lu Z. Huang CC, et al. Brief Bioinform. 2016 Jan;17(1):132-44. doi: 10.1093/bib/bbv024. Epub 2015 May 1. Brief Bioinform. 2016. PMID: 25935162 Free PMC article. Review.
Following the success of the Critical Assessment of protein Structure Prediction (CASP) in bioinformatics research, a number of challenge evaluations have been organized by the text-mining research community to assess and advance natural language processing (NLP) research …
Following the success of the Critical Assessment of protein Structure Prediction (CASP) in bioinformatics research, a number of challenge ev …
Social media mining under the COVID-19 context: Progress, challenges, and opportunities.
Huang X, Wang S, Zhang M, Hu T, Hohl A, She B, Gong X, Li J, Liu X, Gruebner O, Liu R, Li X, Liu Z, Ye X, Li Z. Huang X, et al. Int J Appl Earth Obs Geoinf. 2022 Sep;113:102967. doi: 10.1016/j.jag.2022.102967. Epub 2022 Aug 19. Int J Appl Earth Obs Geoinf. 2022. PMID: 36035895 Free PMC article.
Social media platforms allow users worldwide to create and share information, forging vast sensing networks that allow information on certain topics to be collected, stored, mined, and analyzed in a rapid manner. During the COVID-19 pandemic, extensive social media mini …
Social media platforms allow users worldwide to create and share information, forging vast sensing networks that allow information on certai …
Study of the mining and aquifer interactions in complex geological conditions and its management.
Huang W, Sui L, Wang Y, Zhang C, Jiang D, Cai X, Yang Z. Huang W, et al. Sci Rep. 2023 Jun 10;13(1):9462. doi: 10.1038/s41598-023-34947-6. Sci Rep. 2023. PMID: 37301932 Free PMC article.
This paper examined this phenomenon in a complex strata condition via a case study, and proposed a new mining design to minimize the impact of longwall mining on the overlaying aquifer. ...In summary, the high risk area was determined, and the analysis shows that th …
This paper examined this phenomenon in a complex strata condition via a case study, and proposed a new mining design to minimize the …
Synthetic protein condensates for cellular and metabolic engineering.
Qian ZG, Huang SC, Xia XX. Qian ZG, et al. Nat Chem Biol. 2022 Dec;18(12):1330-1340. doi: 10.1038/s41589-022-01203-3. Epub 2022 Nov 18. Nat Chem Biol. 2022. PMID: 36400990 Review.
Here we review the unique properties of the condensates, the promise and hurdles for harnessing them toward purposeful design and manipulation of biological functions in living cells. In particular, we highlight recent advances in mining and understanding the proteinaceous …
Here we review the unique properties of the condensates, the promise and hurdles for harnessing them toward purposeful design and manipulati …
A Novel Protocol-Free Bandage-Cover Cryptographer.
Sun EY, Wu HC, Huang SC, Kuan YC. Sun EY, et al. IEEE Trans Cybern. 2022 Nov;52(11):11431-11441. doi: 10.1109/TCYB.2021.3117235. Epub 2022 Oct 17. IEEE Trans Cybern. 2022. PMID: 34637392
Besides, this new cryptographic approach can enable camouflages to confuse data-mining robots, which are often encountered in the cyber world nowadays. ...To evaluate such a first-ever cryptographer capable of misleading data-mining robots, we define two new metrics …
Besides, this new cryptographic approach can enable camouflages to confuse data-mining robots, which are often encountered in the cyb …
3,172 results