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Introducing the Lipidomics Minimal Reporting Checklist.
McDonald JG, Ejsing CS, Kopczynski D, Holčapek M, Aoki J, Arita M, Arita M, Baker ES, Bertrand-Michel J, Bowden JA, Brügger B, Ellis SR, Fedorova M, Griffiths WJ, Han X, Hartler J, Hoffmann N, Koelmel JP, Köfeler HC, Mitchell TW, O'Donnell VB, Saigusa D, Schwudke D, Shevchenko A, Ulmer CZ, Wenk MR, Witting M, Wolrab D, Xia Y, Ahrends R, Liebisch G, Ekroos K. McDonald JG, et al. Nat Metab. 2022 Sep;4(9):1086-1088. doi: 10.1038/s42255-022-00628-3. Nat Metab. 2022. PMID: 35934691 No abstract available.
LipidCreator workbench to probe the lipidomic landscape.
Peng B, Kopczynski D, Pratt BS, Ejsing CS, Burla B, Hermansson M, Benke PI, Tan SH, Chan MY, Torta F, Schwudke D, Meckelmann SW, Coman C, Schmitz OJ, MacLean B, Manke MC, Borst O, Wenk MR, Hoffmann N, Ahrends R. Peng B, et al. Nat Commun. 2020 Apr 28;11(1):2057. doi: 10.1038/s41467-020-15960-z. Nat Commun. 2020. PMID: 32345972 Free PMC article.
PeptideMapper: efficient and versatile amino acid sequence and tag mapping.
Kopczynski D, Barsnes H, Njølstad PR, Sickmann A, Vaudel M, Ahrends R. Kopczynski D, et al. Bioinformatics. 2017 Jul 1;33(13):2042-2044. doi: 10.1093/bioinformatics/btx122. Bioinformatics. 2017. PMID: 28334306
AVAILABILITY AND IMPLEMENTATION: PeptideMapper is implemented in the open source Java CompOmics framework under the permissive Apache 2.0 license https://github.com/compomics/compomics-utilities . CONTACT: robert.ahrends@isas.de or marc.vaudel@uib.no. SUPPLEMENTARY INFORMA …
AVAILABILITY AND IMPLEMENTATION: PeptideMapper is implemented in the open source Java CompOmics framework under the permissive Apache 2.0 li …