Functional and Biochemical Characterization of Alvinella pompejana Cys-Loop Receptor Homologues

PLoS One. 2016 Mar 21;11(3):e0151183. doi: 10.1371/journal.pone.0151183. eCollection 2016.

Abstract

Cys-loop receptors are membrane spanning ligand-gated ion channels involved in fast excitatory and inhibitory neurotransmission. Three-dimensional structures of these ion channels, determined by X-ray crystallography or electron microscopy, have revealed valuable information regarding the molecular mechanisms underlying ligand recognition, channel gating and ion conductance. To extend and validate the current insights, we here present promising candidates for further structural studies. We report the biochemical and functional characterization of Cys-loop receptor homologues identified in the proteome of Alvinella pompejana, an extremophilic, polychaete annelid found in hydrothermal vents at the bottom of the Pacific Ocean. Seven homologues were selected, named Alpo1-7. Five of them, Alpo2-6, were unidentified prior to this study. Two-electrode voltage clamp experiments revealed that wild type Alpo5 and Alpo6, both sharing remarkably high sequence identity with human glycine receptor α subunits, are anion-selective channels that can be activated by glycine, GABA and taurine. Furthermore, upon expression in insect cells fluorescence size-exclusion chromatography experiments indicated that four homologues, Alpo1, Alpo4, Alpo6 and Alpo7, can be extracted out of the membrane by a wide variety of detergents while maintaining their oligomeric state. Finally, large-scale purification efforts of Alpo1, Alpo4 and Alpo6 resulted in milligram amounts of biochemically stable and monodisperse protein. Overall, our results establish the evolutionary conservation of glycine receptors in annelids and pave the way for future structural studies.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Cysteine Loop Ligand-Gated Ion Channel Receptors / chemistry
  • Cysteine Loop Ligand-Gated Ion Channel Receptors / isolation & purification
  • Cysteine Loop Ligand-Gated Ion Channel Receptors / metabolism*
  • Cysteine Loop Ligand-Gated Ion Channel Receptors / ultrastructure
  • Glycine / pharmacology
  • Green Fluorescent Proteins / metabolism
  • Ions
  • Ligands
  • Molecular Sequence Data
  • Polychaeta / metabolism*
  • Protein Multimerization
  • Protein Stability
  • Protein Subunits / chemistry
  • Protein Subunits / metabolism
  • Proteome / metabolism
  • Sequence Analysis, Protein
  • Sequence Homology, Amino Acid*
  • Single-Domain Antibodies / metabolism
  • Taurine / pharmacology
  • Temperature
  • gamma-Aminobutyric Acid / pharmacology

Substances

  • Cysteine Loop Ligand-Gated Ion Channel Receptors
  • Ions
  • Ligands
  • Protein Subunits
  • Proteome
  • Single-Domain Antibodies
  • enhanced green fluorescent protein
  • Green Fluorescent Proteins
  • Taurine
  • gamma-Aminobutyric Acid
  • Glycine

Grants and funding

Financial support was from KU Leuven Onderzoekstoelage OT/13/095 and Fonds voor Wetenschappelijk Onderzoek (FWO)- Vlaanderen, http://www.fwo.be/en/, G.0939.11, G.0762.13 to CU. EW is a recipient of a fellowship from the Agency for Innovation by Science and Technology in Flanders (IWT), 131118, http://www.iwt.be/. EP is supported by the Industrieel Onderzoeksfonds (IOF) in Flanders. We thank INSTRUCT, part of the European Strategy Forum on Research Infrastructures (ESFRI) and the Hercules Foundation Flanders for their support to the Nanobody discovery. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript. HiQscreen provided support in the form of salary for author DB, but did not have any additional role in the study design, data collection and analysis, decision to publish, or preparation of the manuscript. The specific role of this author is articulated in the ‘author contributions’ section.