Xueyi Dong - Search Results

Year	Number of Results
2011	3
2012	5
2013	6
2014	8
2015	8
2016	9
2017	11
2018	6
2019	7
2020	10
2021	7
2022	6
2023	5
2024	1

1

HIF-1α promoted vasculogenic mimicry formation in hepatocellular carcinoma through LOXL2 up-regulation in hypoxic tumor microenvironment.

Wang M, Zhao X, Zhu D, Liu T, Liang X, Liu F, Zhang Y, Dong X, Sun B. Wang M, et al. Among authors: dong x. J Exp Clin Cancer Res. 2017 Apr 27;36(1):60. doi: 10.1186/s13046-017-0533-1. J Exp Clin Cancer Res. 2017. PMID: 28449718 Free PMC article.

2

Benchmarking long-read RNA-sequencing analysis tools using in silico mixtures.

Dong X, Du MRM, Gouil Q, Tian L, Jabbari JS, Bowden R, Baldoni PL, Chen Y, Smyth GK, Amarasinghe SL, Law CW, Ritchie ME. Dong X, et al. Nat Methods. 2023 Nov;20(11):1810-1821. doi: 10.1038/s41592-023-02026-3. Epub 2023 Oct 2. Nat Methods. 2023. PMID: 37783886

3

Opportunities and challenges in long-read sequencing data analysis.

Amarasinghe SL, Su S, Dong X, Zappia L, Ritchie ME, Gouil Q. Amarasinghe SL, et al. Among authors: dong x. Genome Biol. 2020 Feb 7;21(1):30. doi: 10.1186/s13059-020-1935-5. Genome Biol. 2020. PMID: 32033565 Free PMC article. Review.

4

Benchmarking UMI-based single-cell RNA-seq preprocessing workflows.

You Y, Tian L, Su S, Dong X, Jabbari JS, Hickey PF, Ritchie ME. You Y, et al. Among authors: dong x. Genome Biol. 2021 Dec 14;22(1):339. doi: 10.1186/s13059-021-02552-3. Genome Biol. 2021. PMID: 34906205 Free PMC article.

5

Modeling group heteroscedasticity in single-cell RNA-seq pseudo-bulk data.

You Y, Dong X, Wee YK, Maxwell MJ, Alhamdoosh M, Smyth GK, Hickey PF, Ritchie ME, Law CW. You Y, et al. Among authors: dong x. Genome Biol. 2023 May 5;24(1):107. doi: 10.1186/s13059-023-02949-2. Genome Biol. 2023. PMID: 37147723 Free PMC article.

6

Harnessing Natural Killer Immunity in Metastatic SCLC.

Best SA, Hess JB, Souza-Fonseca-Guimaraes F, Cursons J, Kersbergen A, Dong X, Rautela J, Hyslop SR, Ritchie ME, Davis MJ, Leong TL, Irving L, Steinfort D, Huntington ND, Sutherland KD. Best SA, et al. Among authors: dong x. J Thorac Oncol. 2020 Sep;15(9):1507-1521. doi: 10.1016/j.jtho.2020.05.008. Epub 2020 May 26. J Thorac Oncol. 2020. PMID: 32470639 Free article.

7

Epigenetic modulators of B cell fate identified through coupled phenotype-transcriptome analysis.

Kong IY, Trezise S, Light A, Todorovski I, Arnau GM, Gadipally S, Yoannidis D, Simpson KJ, Dong X, Whitehead L, Tempany JC, Farchione AJ, Sheikh AA, Groom JR, Rogers KL, Herold MJ, Bryant VL, Ritchie ME, Willis SN, Johnstone RW, Hodgkin PD, Nutt SL, Vervoort SJ, Hawkins ED. Kong IY, et al. Among authors: dong x. Cell Death Differ. 2022 Dec;29(12):2519-2530. doi: 10.1038/s41418-022-01037-5. Epub 2022 Jul 13. Cell Death Differ. 2022. PMID: 35831623 Free PMC article.

8

LncRNA n339260 functions in hepatocellular carcinoma progression via regulation of miRNA30e-5p/TP53INP1 expression.

Liu T, Liao S, Mo J, Bai X, Li Y, Zhang Y, Zhang D, Cheng R, Zhao N, Che N, Guo Y, Dong X, Zhao X. Liu T, et al. Among authors: dong x. J Gastroenterol. 2022 Oct;57(10):784-797. doi: 10.1007/s00535-022-01901-8. Epub 2022 Jul 8. J Gastroenterol. 2022. PMID: 35802258

9

Publisher Correction: Modeling group heteroscedasticity in single-cell RNA-seq pseudo-bulk data.

You Y, Dong X, Wee YK, Maxwell MJ, Alhamdoosh M, Smyth GK, Hickey PF, Ritchie ME, Law CW. You Y, et al. Among authors: dong x. Genome Biol. 2023 May 12;24(1):112. doi: 10.1186/s13059-023-02965-2. Genome Biol. 2023. PMID: 37173797 Free PMC article. No abstract available.

10

CellBench: R/Bioconductor software for comparing single-cell RNA-seq analysis methods.

Su S, Tian L, Dong X, Hickey PF, Freytag S, Ritchie ME. Su S, et al. Among authors: dong x. Bioinformatics. 2020 Apr 1;36(7):2288-2290. doi: 10.1093/bioinformatics/btz889. Bioinformatics. 2020. PMID: 31778143 Free PMC article.

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