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Protein linear indices of the 'macromolecular pseudograph alpha-carbon atom adjacency matrix' in bioinformatics. Part 1: prediction of protein stability effects of a complete set of alanine substitutions in Arc repressor.
Marrero-Ponce Y, Medina-Marrero R, Castillo-Garit JA, Romero-Zaldivar V, Torrens F, Castro EA. Marrero-Ponce Y, et al. Among authors: romero zaldivar v. Bioorg Med Chem. 2005 Apr 15;13(8):3003-15. doi: 10.1016/j.bmc.2005.01.062. Bioorg Med Chem. 2005. PMID: 15781410
Non-stochastic and stochastic linear indices of the molecular pseudograph's atom-adjacency matrix: a novel approach for computational in silico screening and "rational" selection of new lead antibacterial agents.
Marrero-Ponce Y, Marrero RM, Torrens F, Martinez Y, Bernal MG, Zaldivar VR, Castro EA, Abalo RG. Marrero-Ponce Y, et al. Among authors: zaldivar vr. J Mol Model. 2006 Feb;12(3):255-71. doi: 10.1007/s00894-005-0024-8. Epub 2005 Nov 4. J Mol Model. 2006. PMID: 16270182
Bond-based linear indices of the non-stochastic and stochastic edge-adjacency matrix. 1. Theory and modeling of ChemPhys properties of organic molecules.
Marrero-Ponce Y, Martínez-Albelo ER, Casañola-Martín GM, Castillo-Garit JA, Echevería-Díaz Y, Zaldivar VR, Tygat J, Borges JE, García-Domenech R, Torrens F, Pérez-Giménez F. Marrero-Ponce Y, et al. Among authors: zaldivar vr. Mol Divers. 2010 Nov;14(4):731-53. doi: 10.1007/s11030-009-9201-5. Epub 2010 Jan 10. Mol Divers. 2010. PMID: 20063184