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Big Data in metagenomics: Apache Spark vs MPI.
Abuín JM, Lopes N, Ferreira L, Pena TF, Schmidt B. Abuín JM, et al. Among authors: pena tf. PLoS One. 2020 Oct 6;15(10):e0239741. doi: 10.1371/journal.pone.0239741. eCollection 2020. PLoS One. 2020. PMID: 33022000 Free PMC article.
PASTASpark: multiple sequence alignment meets Big Data.
Abuín JM, Pena TF, Pichel JC. Abuín JM, et al. Among authors: pena tf. Bioinformatics. 2017 Sep 15;33(18):2948-2950. doi: 10.1093/bioinformatics/btx354. Bioinformatics. 2017. PMID: 28582480
A big data approach to metagenomics for all-food-sequencing.
Kobus R, Abuín JM, Müller A, Hellmann SL, Pichel JC, Pena TF, Hildebrandt A, Hankeln T, Schmidt B. Kobus R, et al. Among authors: pena tf. BMC Bioinformatics. 2020 Mar 12;21(1):102. doi: 10.1186/s12859-020-3429-6. BMC Bioinformatics. 2020. PMID: 32164527 Free PMC article.