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Page 1
Big Data in metagenomics: Apache Spark vs MPI.
PLoS One. 2020 Oct 6;15(10):e0239741. doi: 10.1371/journal.pone.0239741. eCollection 2020.
PLoS One. 2020.
PMID: 33022000
Free PMC article.
PASTASpark: multiple sequence alignment meets Big Data.
Abuín JM, Pena TF, Pichel JC.
Abuín JM, et al. Among authors: pena tf.
Bioinformatics. 2017 Sep 15;33(18):2948-2950. doi: 10.1093/bioinformatics/btx354.
Bioinformatics. 2017.
PMID: 28582480
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A big data approach to metagenomics for all-food-sequencing.
Kobus R, Abuín JM, Müller A, Hellmann SL, Pichel JC, Pena TF, Hildebrandt A, Hankeln T, Schmidt B.
Kobus R, et al. Among authors: pena tf.
BMC Bioinformatics. 2020 Mar 12;21(1):102. doi: 10.1186/s12859-020-3429-6.
BMC Bioinformatics. 2020.
PMID: 32164527
Free PMC article.
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SparkBWA: Speeding Up the Alignment of High-Throughput DNA Sequencing Data.
Abuín JM, Pichel JC, Pena TF, Amigo J.
Abuín JM, et al. Among authors: pena tf.
PLoS One. 2016 May 16;11(5):e0155461. doi: 10.1371/journal.pone.0155461. eCollection 2016.
PLoS One. 2016.
PMID: 27182962
Free PMC article.
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BigBWA: approaching the Burrows-Wheeler aligner to Big Data technologies.
Abuín JM, Pichel JC, Pena TF, Amigo J.
Abuín JM, et al. Among authors: pena tf.
Bioinformatics. 2015 Dec 15;31(24):4003-5. doi: 10.1093/bioinformatics/btv506. Epub 2015 Aug 30.
Bioinformatics. 2015.
PMID: 26323715
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