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Galaxy Training: A powerful framework for teaching!
Hiltemann S, Rasche H, Gladman S, Hotz HR, Larivière D, Blankenberg D, Jagtap PD, Wollmann T, Bretaudeau A, Goué N, Griffin TJ, Royaux C, Le Bras Y, Mehta S, Syme A, Coppens F, Droesbeke B, Soranzo N, Bacon W, Psomopoulos F, Gallardo-Alba C, Davis J, Föll MC, Fahrner M, Doyle MA, Serrano-Solano B, Fouilloux AC, van Heusden P, Maier W, Clements D, Heyl F; Galaxy Training Network; Grüning B, Batut B. Hiltemann S, et al. Among authors: wollmann t. PLoS Comput Biol. 2023 Jan 9;19(1):e1010752. doi: 10.1371/journal.pcbi.1010752. eCollection 2023 Jan. PLoS Comput Biol. 2023. PMID: 36622853 Free PMC article.
PITX1 Is a Regulator of TERT Expression in Prostate Cancer with Prognostic Power.
Poos AM, Schroeder C, Jaishankar N, Röll D, Oswald M, Meiners J, Braun DM, Knotz C, Frank L, Gunkel M, Spilger R, Wollmann T, Polonski A, Makrypidi-Fraune G, Fraune C, Graefen M, Chung I, Stenzel A, Erfle H, Rohr K, Baniahmad A, Sauter G, Rippe K, Simon R, Koenig R. Poos AM, et al. Among authors: wollmann t. Cancers (Basel). 2022 Mar 1;14(5):1267. doi: 10.3390/cancers14051267. Cancers (Basel). 2022. PMID: 35267575 Free PMC article.
Accessible and reproducible mass spectrometry imaging data analysis in Galaxy.
Föll MC, Moritz L, Wollmann T, Stillger MN, Vockert N, Werner M, Bronsert P, Rohr K, Grüning BA, Schilling O. Föll MC, et al. Among authors: wollmann t. Gigascience. 2019 Dec 1;8(12):giz143. doi: 10.1093/gigascience/giz143. Gigascience. 2019. PMID: 31816088 Free PMC article.
Predicting breast tumor proliferation from whole-slide images: The TUPAC16 challenge.
Veta M, Heng YJ, Stathonikos N, Bejnordi BE, Beca F, Wollmann T, Rohr K, Shah MA, Wang D, Rousson M, Hedlund M, Tellez D, Ciompi F, Zerhouni E, Lanyi D, Viana M, Kovalev V, Liauchuk V, Phoulady HA, Qaiser T, Graham S, Rajpoot N, Sjöblom E, Molin J, Paeng K, Hwang S, Park S, Jia Z, Chang EI, Xu Y, Beck AH, van Diest PJ, Pluim JPW. Veta M, et al. Among authors: wollmann t. Med Image Anal. 2019 May;54:111-121. doi: 10.1016/j.media.2019.02.012. Epub 2019 Feb 27. Med Image Anal. 2019. PMID: 30861443
Hyperparameter optimization for image analysis: application to prostate tissue images and live cell data of virus-infected cells.
Ritter C, Wollmann T, Bernhard P, Gunkel M, Braun DM, Lee JY, Meiners J, Simon R, Sauter G, Erfle H, Rippe K, Bartenschlager R, Rohr K. Ritter C, et al. Among authors: wollmann t. Int J Comput Assist Radiol Surg. 2019 Nov;14(11):1847-1857. doi: 10.1007/s11548-019-02010-3. Epub 2019 Jun 8. Int J Comput Assist Radiol Surg. 2019. PMID: 31177423