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Aligning Standards Communities for Omics Biodiversity Data: Sustainable Darwin Core-MIxS Interoperability.
Meyer R, Appeltans W, Duncan WD, Dimitrova M, Gan YM, Stjernegaard Jeppesen T, Mungall C, Paul DL, Provoost P, Robertson T, Schriml L, Suominen S, Walls R, Sweetlove M, Ung V, Van de Putte A, Wallis E, Wieczorek J, Buttigieg PL. Meyer R, et al. Among authors: stjernegaard jeppesen t. Biodivers Data J. 2023 Oct 3;11:e112420. doi: 10.3897/BDJ.11.e112420. eCollection 2023. Biodivers Data J. 2023. PMID: 37829294 Free PMC article.
The Taxon Hypothesis Paradigm-On the Unambiguous Detection and Communication of Taxa.
Kõljalg U, Nilsson HR, Schigel D, Tedersoo L, Larsson KH, May TW, Taylor AFS, Jeppesen TS, Frøslev TG, Lindahl BD, Põldmaa K, Saar I, Suija A, Savchenko A, Yatsiuk I, Adojaan K, Ivanov F, Piirmann T, Pöhönen R, Zirk A, Abarenkov K. Kõljalg U, et al. Among authors: jeppesen ts. Microorganisms. 2020 Nov 30;8(12):1910. doi: 10.3390/microorganisms8121910. Microorganisms. 2020. PMID: 33266327 Free PMC article.
The UNITE database for molecular identification and taxonomic communication of fungi and other eukaryotes: sequences, taxa and classifications reconsidered.
Abarenkov K, Nilsson RH, Larsson KH, Taylor AFS, May TW, Frøslev TG, Pawlowska J, Lindahl B, Põldmaa K, Truong C, Vu D, Hosoya T, Niskanen T, Piirmann T, Ivanov F, Zirk A, Peterson M, Cheeke TE, Ishigami Y, Jansson AT, Jeppesen TS, Kristiansson E, Mikryukov V, Miller JT, Oono R, Ossandon FJ, Paupério J, Saar I, Schigel D, Suija A, Tedersoo L, Kõljalg U. Abarenkov K, et al. Among authors: jeppesen ts. Nucleic Acids Res. 2024 Jan 5;52(D1):D791-D797. doi: 10.1093/nar/gkad1039. Nucleic Acids Res. 2024. PMID: 37953409 Free PMC article.
Considerations and consequences of allowing DNA sequence data as types of fungal taxa.
Zamora JC, Svensson M, Kirschner R, Olariaga I, Ryman S, Parra LA, Geml J, Rosling A, Adamčík S, Ahti T, Aime MC, Ainsworth AM, Albert L, Albertó E, García AA, Ageev D, Agerer R, Aguirre-Hudson B, Ammirati J, Andersson H, Angelini C, Antonín V, Aoki T, Aptroot A, Argaud D, Sosa BIA, Aronsen A, Arup U, Asgari B, Assyov B, Atienza V, Bandini D, Baptista-Ferreira JL, Baral HO, Baroni T, Barreto RW, Beker H, Bell A, Bellanger JM, Bellù F, Bemmann M, Bendiksby M, Bendiksen E, Bendiksen K, Benedek L, Bérešová-Guttová A, Berger F, Berndt R, Bernicchia A, Biketova AY, Bizio E, Bjork C, Boekhout T, Boertmann D, Böhning T, Boittin F, Boluda CG, Boomsluiter MW, Borovička J, Brandrud TE, Braun U, Brodo I, Bulyonkova T, Burdsall HH Jr, Buyck B, Burgaz AR, Calatayud V, Callac P, Campo E, Candusso M, Capoen B, Carbó J, Carbone M, Castañeda-Ruiz RF, Castellano MA, Chen J, Clerc P, Consiglio G, Corriol G, Courtecuisse R, Crespo A, Cripps C, Crous PW, da Silva GA, da Silva M, Dam M, Dam N, Dämmrich F, Das K, Davies L, De Crop E, De Kesel A, De Lange R, De Madrignac Bonzi B, Dela Cruz TEE, Delgat L, Demoulin V, Desjardin DE, Diederich P, Dima B, Dios MM, Divakar PK, Douanla-Meli C, Douglas B, Drechs… See abstract for full author list ➔ Zamora JC, et al. Among authors: jeppesen ts. IMA Fungus. 2018 Jun;9(1):167-175. doi: 10.5598/imafungus.2018.09.01.10. Epub 2018 May 24. IMA Fungus. 2018. PMID: 30018877 Free PMC article.
Determining threshold values for barcoding fungi: lessons from Cortinarius (Basidiomycota), a highly diverse and widespread ectomycorrhizal genus.
Garnica S, Schön ME, Abarenkov K, Riess K, Liimatainen K, Niskanen T, Dima B, Soop K, Frøslev TG, Jeppesen TS, Peintner U, Kuhnert-Finkernagel R, Brandrud TE, Saar G, Oertel B, Ammirati JF. Garnica S, et al. Among authors: jeppesen ts. FEMS Microbiol Ecol. 2016 Apr;92(4):fiw045. doi: 10.1093/femsec/fiw045. Epub 2016 Feb 28. FEMS Microbiol Ecol. 2016. PMID: 26929438