Sequence-based comparison of field and vaccine strains of infectious bursal disease virus in Ethiopia reveals an amino acid mismatch in the immunodominant VP2 protein

Arch Virol. 2020 Jun;165(6):1367-1375. doi: 10.1007/s00705-020-04622-6. Epub 2020 Apr 13.

Abstract

Sequencing of the VP2 region was carried out to identify amino acid mismatches between vaccine strains and field isolates of infectious bursal disease virus (IBDV). Viruses were isolated in chicken embryo fibroblast (DF-1) cells using pooled samples of bursa collected from nine outbreaks, which affected 30,250 chickens in five localities, with an overall mortality of 47.87%. Virus strains were identified by comparing the deduced amino acid sequence between positions 232 and 446 of the immunodominant VP2 epitope. All of the pooled samples were positive for IBDV. RT-PCR yielded a 645-bp DNA fragment of the VP2 gene. Phylogenetic analysis of this fragment revealed clustering of these isolates with very virulent IBDV strains. The amino acid sequences of these isolates were identical to those of the European very virulent strains UK 661 and DV 86, except at position 222, but differed from the vaccine strains used in Ethiopia, suggesting the possible introduction of virulent virus strains to Ethiopia from Europe. Our study demonstrates the widespread presence of very virulent strains of IBDV on poultry farms in Ethiopia and demonstrates the need to evaluate the protective level of existing vaccines against circulating field viruses.

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Birnaviridae Infections / veterinary*
  • Birnaviridae Infections / virology
  • Chickens / virology*
  • DNA Primers
  • Disease Outbreaks / veterinary
  • Ethiopia
  • Infectious bursal disease virus / genetics
  • Phylogeny
  • Poultry Diseases / virology*
  • RNA, Viral / genetics
  • Sequence Analysis, RNA / veterinary
  • Viral Structural Proteins / genetics*
  • Viral Vaccines / immunology*
  • Virulence

Substances

  • DNA Primers
  • RNA, Viral
  • VP2 protein, infectious bursal disease virus
  • Viral Structural Proteins
  • Viral Vaccines