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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
1981 1
1982 2
1984 1
1985 1
1987 2
1990 1
1991 1
1992 3
1993 3
1994 1
1995 7
1996 5
1997 7
1998 8
1999 2
2000 4
2001 3
2002 7
2003 2
2004 2
2005 1
2006 7
2007 4
2008 3
2009 4
2010 1
2011 3
2012 9
2013 9
2014 5
2015 6
2016 2
2018 3
2019 4
2020 2
2021 1
2022 4
2023 2
2024 1

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122 results

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Page 1
Upadacitinib for psoriatic arthritis refractory to biologics: SELECT-PsA 2.
Mease PJ, Lertratanakul A, Anderson JK, Papp K, Van den Bosch F, Tsuji S, Dokoupilova E, Keiserman M, Wang X, Zhong S, McCaskill RM, Zueger P, Pangan AL, Tillett W. Mease PJ, et al. Ann Rheum Dis. 2021 Mar;80(3):312-320. doi: 10.1136/annrheumdis-2020-218870. Epub 2020 Dec 3. Ann Rheum Dis. 2021. PMID: 33272960 Free PMC article. Clinical Trial.
Triglyceride Lowering with Pemafibrate to Reduce Cardiovascular Risk.
Das Pradhan A, Glynn RJ, Fruchart JC, MacFadyen JG, Zaharris ES, Everett BM, Campbell SE, Oshima R, Amarenco P, Blom DJ, Brinton EA, Eckel RH, Elam MB, Felicio JS, Ginsberg HN, Goudev A, Ishibashi S, Joseph J, Kodama T, Koenig W, Leiter LA, Lorenzatti AJ, Mankovsky B, Marx N, Nordestgaard BG, Páll D, Ray KK, Santos RD, Soran H, Susekov A, Tendera M, Yokote K, Paynter NP, Buring JE, Libby P, Ridker PM; PROMINENT Investigators. Das Pradhan A, et al. N Engl J Med. 2022 Nov 24;387(21):1923-1934. doi: 10.1056/NEJMoa2210645. Epub 2022 Nov 5. N Engl J Med. 2022. PMID: 36342113 Clinical Trial.
Local RNA folding revisited.
Waldl M, Spicher T, Lorenz R, Beckmann IK, Hofacker IL, Löhneysen SV, Stadler PF. Waldl M, et al. J Bioinform Comput Biol. 2023 Aug;21(4):2350016. doi: 10.1142/S0219720023500166. Epub 2023 Jul 28. J Bioinform Comput Biol. 2023. PMID: 37522173
Here we revisit the local folding problem, present a concise mathematical formalization that generalizes previous approaches and show that correct Boltzmann samples can be obtained by local stochastic backtracing in McCaskill's algorithms but not from local folding recursi …
Here we revisit the local folding problem, present a concise mathematical formalization that generalizes previous approaches and show that c …
Statistical and Bayesian approaches to RNA secondary structure prediction.
Ding Y. Ding Y. RNA. 2006 Mar;12(3):323-31. doi: 10.1261/rna.2274106. RNA. 2006. PMID: 16495231 Free PMC article. Review.
For several decades, free energy minimization has been the most popular method for prediction from a single sequence. In recent years, the McCaskill algorithm for computation of partition function and base-pair probabilities has become increasingly appreciated. ...
For several decades, free energy minimization has been the most popular method for prediction from a single sequence. In recent years, the …
Analysis on the in-silico ensemble methods for 3D modelling of ssDNA aptamers.
Bachu V, Barman K, Goswami P. Bachu V, et al. Biophys Chem. 2023 Dec;303:107111. doi: 10.1016/j.bpc.2023.107111. Epub 2023 Sep 25. Biophys Chem. 2023. PMID: 37774437
There were variations in the 2D structure predictions by the web applications, even though all these applications were a combination of the MFE, MEA, and McCaskill functions. Processing these structures through the web applications described above produced best-fit 3D stru …
There were variations in the 2D structure predictions by the web applications, even though all these applications were a combination of the …
An Efficient Dual Sampling Algorithm with Hamming Distance Filtration.
Barrett C, He Q, Huang FW, Reidys CM. Barrett C, et al. J Comput Biol. 2018 Nov;25(11):1179-1192. doi: 10.1089/cmb.2018.0075. Epub 2018 Aug 22. J Comput Biol. 2018. PMID: 30133328
Fixing the sequence in the pairing produces the RNA energy landscape, whose partition function was discovered by McCaskill. Dually, fixing the structure induces the energy landscape of sequences. ...
Fixing the sequence in the pairing produces the RNA energy landscape, whose partition function was discovered by McCaskill. Dually, f …
Efficient algorithms for probing the RNA mutation landscape.
Waldispühl J, Devadas S, Berger B, Clote P. Waldispühl J, et al. PLoS Comput Biol. 2008 Aug 8;4(8):e1000124. doi: 10.1371/journal.pcbi.1000124. PLoS Comput Biol. 2008. PMID: 18688270 Free PMC article.
This broad range of functions is achieved through specific structures that have been (presumably) optimized through evolution. State-of-the-art methods, such as McCaskill's algorithm, use a statistical mechanics framework based on the computation of the partition function …
This broad range of functions is achieved through specific structures that have been (presumably) optimized through evolution. State-of-the- …
Robust prediction of consensus secondary structures using averaged base pairing probability matrices.
Kiryu H, Kin T, Asai K. Kiryu H, et al. Bioinformatics. 2007 Feb 15;23(4):434-41. doi: 10.1093/bioinformatics/btl636. Epub 2006 Dec 20. Bioinformatics. 2007. PMID: 17182698
We compared three algorithms that maximize the expected accuracy of secondary structures as well as other frequently used algorithms. We found that one of our algorithms, called McCaskill-MEA, was more robust against alignment failures than others. The McCaskill-MEA …
We compared three algorithms that maximize the expected accuracy of secondary structures as well as other frequently used algorithms. We fou …
Bioconjugation Strategies for Tobacco Mild Green Mosaic Virus.
González-Gamboa I, Caparco AA, McCaskill JM, Steinmetz NF. González-Gamboa I, et al. Chembiochem. 2022 Sep 16;23(18):e202200323. doi: 10.1002/cbic.202200323. Epub 2022 Aug 3. Chembiochem. 2022. PMID: 35835718 Free PMC article.
122 results