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uap: reproducible and robust HTS data analysis.
Kämpf C, Specht M, Scholz A, Puppel SH, Doose G, Reiche K, Schor J, Hackermüller J. Kämpf C, et al. Among authors: puppel sh. BMC Bioinformatics. 2019 Dec 12;20(1):664. doi: 10.1186/s12859-019-3219-1. BMC Bioinformatics. 2019. PMID: 31830916 Free PMC article.
Database for queries of melanoma cohorts with molecular and clinical data.
Philip M, Puppel SH, Stiller M, Paschen A, Roesch A, Zaremba A, Schadendorf D, Horn S. Philip M, et al. Among authors: puppel sh. Pigment Cell Melanoma Res. 2023 Mar;36(2):252-258. doi: 10.1111/pcmr.13075. Epub 2022 Dec 7. Pigment Cell Melanoma Res. 2023. PMID: 36382970
ProstaTrend-A Multivariable Prognostic RNA Expression Score for Aggressive Prostate Cancer.
Kreuz M, Otto DJ, Fuessel S, Blumert C, Bertram C, Bartsch S, Loeffler D, Puppel SH, Rade M, Buschmann T, Christ S, Erdmann K, Friedrich M, Froehner M, Muders MH, Schreiber S, Specht M, Toma MI, Benigni F, Freschi M, Gandaglia G, Briganti A, Baretton GB, Loeffler M, Hackermüller J, Reiche K, Wirth M, Horn F. Kreuz M, et al. Among authors: puppel sh. Eur Urol. 2020 Sep;78(3):452-459. doi: 10.1016/j.eururo.2020.06.001. Epub 2020 Jul 4. Eur Urol. 2020. PMID: 32631745
Characterization and evaluation of gene fusions as a measure of genetic instability and disease prognosis in prostate cancer.
Schimmelpfennig C, Rade M, Füssel S, Löffler D, Blumert C, Bertram C, Borkowetz A, Otto DJ, Puppel SH, Hönscheid P, Sommer U, Baretton GB, Köhl U, Wirth M, Thomas C, Horn F, Kreuz M, Reiche K. Schimmelpfennig C, et al. Among authors: puppel sh. BMC Cancer. 2023 Jun 22;23(1):575. doi: 10.1186/s12885-023-11019-6. BMC Cancer. 2023. PMID: 37349736 Free PMC article.
The Role of lncRNAs TAPIR-1 and -2 as Diagnostic Markers and Potential Therapeutic Targets in Prostate Cancer.
Friedrich M, Wiedemann K, Reiche K, Puppel SH, Pfeifer G, Zipfel I, Binder S, Köhl U, Müller GA, Engeland K, Aigner A, Füssel S, Fröhner M, Peitzsch C, Dubrovska A, Rade M, Christ S, Schreiber S, Hackermüller J, Lehmann J, Toma MI, Muders MH, Sommer U, Baretton GB, Wirth M, Horn F. Friedrich M, et al. Among authors: puppel sh. Cancers (Basel). 2020 Apr 30;12(5):1122. doi: 10.3390/cancers12051122. Cancers (Basel). 2020. PMID: 32365858 Free PMC article.