Shubham Tripathi - Search Results

Year	Number of Results
2015	1
2016	1
2017	1
2018	2
2019	1
2020	5
2021	5
2022	8
2023	6
2024	0

1

Identification of EMT signaling cross-talk and gene regulatory networks by single-cell RNA sequencing.

Deshmukh AP, Vasaikar SV, Tomczak K, Tripathi S, den Hollander P, Arslan E, Chakraborty P, Soundararajan R, Jolly MK, Rai K, Levine H, Mani SA. Deshmukh AP, et al. Among authors: tripathi s. Proc Natl Acad Sci U S A. 2021 May 11;118(19):e2102050118. doi: 10.1073/pnas.2102050118. Proc Natl Acad Sci U S A. 2021. PMID: 33941680 Free PMC article.

2

Systems immunology of regulatory T cells: can one circuit explain it all?

Tripathi S, Tsang JS, Park K. Tripathi S, et al. Trends Immunol. 2023 Oct;44(10):766-781. doi: 10.1016/j.it.2023.08.007. Epub 2023 Sep 9. Trends Immunol. 2023. PMID: 37690962 Review.

3

The Physics of Cellular Decision Making During Epithelial-Mesenchymal Transition.

Tripathi S, Levine H, Jolly MK. Tripathi S, et al. Annu Rev Biophys. 2020 May 6;49:1-18. doi: 10.1146/annurev-biophys-121219-081557. Epub 2020 Jan 8. Annu Rev Biophys. 2020. PMID: 31913665 Review.

4

Towards decoding the coupled decision-making of metabolism and epithelial-to-mesenchymal transition in cancer.

Jia D, Park JH, Kaur H, Jung KH, Yang S, Tripathi S, Galbraith M, Deng Y, Jolly MK, Kaipparettu BA, Onuchic JN, Levine H. Jia D, et al. Among authors: tripathi s. Br J Cancer. 2021 Jun;124(12):1902-1911. doi: 10.1038/s41416-021-01385-y. Epub 2021 Apr 15. Br J Cancer. 2021. PMID: 33859341 Free PMC article. Review.

5

Epigenetic factor competition reshapes the EMT landscape.

Al-Radhawi MA, Tripathi S, Zhang Y, Sontag ED, Levine H. Al-Radhawi MA, et al. Among authors: tripathi s. Proc Natl Acad Sci U S A. 2022 Oct 18;119(42):e2210844119. doi: 10.1073/pnas.2210844119. Epub 2022 Oct 10. Proc Natl Acad Sci U S A. 2022. PMID: 36215492 Free PMC article.

6

Quantifying Cancer Epithelial-Mesenchymal Plasticity and its Association with Stemness and Immune Response.

Jia D, Li X, Bocci F, Tripathi S, Deng Y, Jolly MK, Onuchic JN, Levine H. Jia D, et al. Among authors: tripathi s. J Clin Med. 2019 May 22;8(5):725. doi: 10.3390/jcm8050725. J Clin Med. 2019. PMID: 31121840 Free PMC article. Review.

7

DNA supercoiling-mediated collective behavior of co-transcribing RNA polymerases.

Tripathi S, Brahmachari S, Onuchic JN, Levine H. Tripathi S, et al. Nucleic Acids Res. 2022 Feb 22;50(3):1269-1279. doi: 10.1093/nar/gkab1252. Nucleic Acids Res. 2022. PMID: 34951454 Free PMC article.

8

Mathematical Modeling of Plasticity and Heterogeneity in EMT.

Tripathi S, Xing J, Levine H, Jolly MK. Tripathi S, et al. Methods Mol Biol. 2021;2179:385-413. doi: 10.1007/978-1-0716-0779-4_28. Methods Mol Biol. 2021. PMID: 32939734 Free PMC article.

9

Ancient marine sediment DNA reveals diatom transition in Antarctica.

Armbrecht L, Weber ME, Raymo ME, Peck VL, Williams T, Warnock J, Kato Y, Hernández-Almeida I, Hoem F, Reilly B, Hemming S, Bailey I, Martos YM, Gutjahr M, Percuoco V, Allen C, Brachfeld S, Cardillo FG, Du Z, Fauth G, Fogwill C, Garcia M, Glüder A, Guitard M, Hwang JH, Iizuka M, Kenlee B, O'Connell S, Pérez LF, Ronge TA, Seki O, Tauxe L, Tripathi S, Zheng X. Armbrecht L, et al. Among authors: tripathi s. Nat Commun. 2022 Oct 2;13(1):5787. doi: 10.1038/s41467-022-33494-4. Nat Commun. 2022. PMID: 36184671 Free PMC article.

10

Minimal frustration underlies the usefulness of incomplete regulatory network models in biology.

Tripathi S, Kessler DA, Levine H. Tripathi S, et al. Proc Natl Acad Sci U S A. 2023 Jan 3;120(1):e2216109120. doi: 10.1073/pnas.2216109120. Epub 2022 Dec 29. Proc Natl Acad Sci U S A. 2023. PMID: 36580597 Free PMC article.

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