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Pitfalls in machine learning-based assessment of tumor-infiltrating lymphocytes in breast cancer: A report of the International Immuno-Oncology Biomarker Working Group on Breast Cancer.
Thagaard J, Broeckx G, Page DB, Jahangir CA, Verbandt S, Kos Z, Gupta R, Khiroya R, Abduljabbar K, Acosta Haab G, Acs B, Akturk G, Almeida JS, Alvarado-Cabrero I, Amgad M, Azmoudeh-Ardalan F, Badve S, Baharun NB, Balslev E, Bellolio ER, Bheemaraju V, Blenman KR, Botinelly Mendonça Fujimoto L, Bouchmaa N, Burgues O, Chardas A, Chon U Cheang M, Ciompi F, Cooper LA, Coosemans A, Corredor G, Dahl AB, Dantas Portela FL, Deman F, Demaria S, Doré Hansen J, Dudgeon SN, Ebstrup T, Elghazawy M, Fernandez-Martín C, Fox SB, Gallagher WM, Giltnane JM, Gnjatic S, Gonzalez-Ericsson PI, Grigoriadis A, Halama N, Hanna MG, Harbhajanka A, Hart SN, Hartman J, Hauberg S, Hewitt S, Hida AI, Horlings HM, Husain Z, Hytopoulos E, Irshad S, Janssen EA, Kahila M, Kataoka TR, Kawaguchi K, Kharidehal D, Khramtsov AI, Kiraz U, Kirtani P, Kodach LL, Korski K, Kovács A, Laenkholm AV, Lang-Schwarz C, Larsimont D, Lennerz JK, Lerousseau M, Li X, Ly A, Madabhushi A, Maley SK, Manur Narasimhamurthy V, Marks DK, McDonald ES, Mehrotra R, Michiels S, Minhas FUAA, Mittal S, Moore DA, Mushtaq S, Nighat H, Papathomas T, Penault-Llorca F, Perera RD, Pinard CJ, Pinto-Cardenas JC, Pruneri G, Pusztai L, Rahman A, Rajpo… See abstract for full author list ➔ Thagaard J, et al. Among authors: hauberg s. J Pathol. 2023 Aug;260(5):498-513. doi: 10.1002/path.6155. Epub 2023 Aug 23. J Pathol. 2023. PMID: 37608772 Free PMC article. Review.
Learning meaningful representations of protein sequences.
Detlefsen NS, Hauberg S, Boomsma W. Detlefsen NS, et al. Among authors: hauberg s. Nat Commun. 2022 Apr 8;13(1):1914. doi: 10.1038/s41467-022-29443-w. Nat Commun. 2022. PMID: 35395843 Free PMC article.
Principal Curves on Riemannian Manifolds.
Hauberg S. Hauberg S. IEEE Trans Pattern Anal Mach Intell. 2016 Sep;38(9):1915-21. doi: 10.1109/TPAMI.2015.2496166. Epub 2015 Oct 29. IEEE Trans Pattern Anal Mach Intell. 2016. PMID: 26540674
Data-driven forward model inference for EEG brain imaging.
Hansen ST, Hauberg S, Hansen LK. Hansen ST, et al. Among authors: hauberg s. Neuroimage. 2016 Oct 1;139:249-258. doi: 10.1016/j.neuroimage.2016.06.017. Epub 2016 Jun 13. Neuroimage. 2016. PMID: 27307192
Transformations Based on Continuous Piecewise-Affine Velocity Fields.
Freifeld O, Hauberg S, Batmanghelich K, Fisher JW. Freifeld O, et al. Among authors: hauberg s. IEEE Trans Pattern Anal Mach Intell. 2017 Dec;39(12):2496-2509. doi: 10.1109/TPAMI.2016.2646685. Epub 2017 Jan 11. IEEE Trans Pattern Anal Mach Intell. 2017. PMID: 28092517 Free PMC article.